Ogataea parapolymorpha: HPODL_04729
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Entry
HPODL_04729 CDS
T08137
Name
(RefSeq) Replication factor C subunit 5
KO
K10756
replication factor C subunit 3/5
Organism
opa
Ogataea parapolymorpha
Pathway
opa03030
DNA replication
opa03410
Base excision repair
opa03420
Nucleotide excision repair
opa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HPODL_04729
03410 Base excision repair
HPODL_04729
03420 Nucleotide excision repair
HPODL_04729
03430 Mismatch repair
HPODL_04729
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
opa03032
]
HPODL_04729
03036 Chromosome and associated proteins [BR:
opa03036
]
HPODL_04729
03400 DNA repair and recombination proteins [BR:
opa03400
]
HPODL_04729
DNA replication proteins [BR:
opa03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
HPODL_04729
DNA Replication Termination Factors
ELG1-RFC complex
HPODL_04729
Chromosome and associated proteins [BR:
opa03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
HPODL_04729
DNA repair and recombination proteins [BR:
opa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
HPODL_04729
Check point factors
HRAD17(Rad24)-RFC complex
HPODL_04729
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
AAA_22
AAA
Rad17
AAA_16
AAA_30
RuvB_N
AAA_24
Mg_chelatase
SLFN-g3_helicase
Motif
Other DBs
NCBI-GeneID:
25774154
NCBI-ProteinID:
XP_013936550
UniProt:
W1QI35
LinkDB
All DBs
Position
II:complement(365641..366786)
Genome browser
AA seq
381 aa
AA seq
DB search
MSLWADKYRPRTLSELDFHPKISRQLQVMASSGEFPHLLVYGPPGAGKKTRVLATLREIY
GAGTERLRVDVKAFNLPSGRKLEFNVISSSFHLEITPSDMGNNDRIVIQDLLKEIGQIES
LDFSRFENAVMSPNTKEQNSGKKKFKVVIINEAELLTRDAQAALRRTMEKYSANIRLILI
CNSTSNIIDPIKSRTLPIRIASPTTSACAGVLGMILRKEHHAKKAFPDDDEQRNIIFKRI
SDASERNLRMSIMMMEAMYMNHDTVSITTPIIKPDWADVLHELVTGICKDRSVSRLQQAR
SILYELLAHAIPAKLLLKKLTMTIWDFTGTLDIKNKSEVRKAVISASSIYDERLSLGSKD
IFHLEGFITKVMVILEKSVIN
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
atgtccctttgggccgataaatatagaccaagaactctcagtgagttggattttcatcca
aaaatctcgagacagttgcaagttatggcaagttcgggagagtttcctcatctcttggtg
tatgggccacctggtgctgggaaaaaaacacgagttcttgcaacactgagagaaatttat
ggagctggcaccgaaagactgagggtcgatgtgaaagctttcaatttgccttcgggcaga
aagctcgaattcaatgtcatatcctcctccttccatttagaaattacccccagtgatatg
ggtaacaatgatcgaattgttatacaagatttgctcaaggagattggccagattgaaagt
ctcgatttttccaggtttgaaaatgctgtaatgtcaccaaacacaaaggagcaaaattcg
ggcaagaagaaattcaaggttgtcattatcaatgaagcagagctactcaccagagatgca
caagcagcattgagaagaaccatggagaaatattcggccaacatcaggctgatactaatc
tgtaactcgacctccaatatcatcgatccaataaagtcacgtacattgcctatcagaatt
gcgtctccgaccacctctgcatgcgctggagttttaggaatgattttaaggaaggagcac
catgcgaaaaaagcctttcctgatgacgacgagcaaagaaacataatattcaagagaata
tctgatgcttctgaaagaaatcttagaatgtcaataatgatgatggaagctatgtacatg
aatcacgataccgtcagcataacgacccccatcataaaacctgactgggctgatgttctt
catgagttagtcactggcatttgcaaagatcgatccgtatcaagattacaacaagcaaga
tctattttatatgagttgctggctcatgccattccggcaaagctgctcttgaaaaagctg
acaatgaccatatgggattttactgggacccttgacatcaaaaataaatcagaagtgagg
aaagccgtcatttcagccagttcgatatacgatgaaaggctttctctaggttccaaagac
atatttcacttggaaggtttcatcacaaaagtcatggtgattttggagaaaagtgtgatc
aattga
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