Ogataea parapolymorpha: HPODL_04785
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Entry
HPODL_04785 CDS
T08137
Name
(RefSeq) APN2 Class II abasic (AP) endonuclease involved in repair of DNA damage
KO
K10772
AP endonuclease 2 [EC:
3.1.11.2
]
Organism
opa
Ogataea parapolymorpha
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
opa03400
]
HPODL_04785
Enzymes [BR:
opa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
HPODL_04785
DNA repair and recombination proteins [BR:
opa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
HPODL_04785
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Motif
Pfam:
Exo_endo_phos
Zn_ribbon_GRF
Exo_endo_phos_2
DIT1_PvcA
Motif
Other DBs
NCBI-GeneID:
25774209
NCBI-ProteinID:
XP_013936609
UniProt:
W1QJH1
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Position
II:complement(459126..460781)
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AA seq
551 aa
AA seq
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MPGDDRIPPKLTPTTLRLVTFNVNGIKTLKNYFPWTLVSNYSQMLNMMNIDVITFQELKV
QRPDVDLSIADVDGYRSFISVPISKKGYSGVGVYVRKPRDDEPEILKKCLTVVRVEEGIT
GILPHQKKHVSFKEAYSDPVLQPTCIGGYPDHKNMYDKFRKLDSEGRCVIIELNFNIVVI
SVYCPANSLGTDEGEEFRLLFLRCLFERARNLRAMGKKVVVMGDINVCVDLIDSDDTIKQ
GFKERRLVKAQDYSDFETLNADQVLAFKHSAPHRELVNQYVKDTTGMRPDGDSHVLHDVV
REKQGRRLKMYTVWSTFKSNRPLNVGSRIDLILASSQLAPLVSQADIWPFLHGSDHCPVH
VDFELADLEFSPEEDRSAEYAAKSNWFEAKNFYGLHTKGSIDKFFRKREPKRQEKVDSER
DDADGGSDSATPGYSSRKRARKDRPDQLSISDFFFRSDSSPPPAEDDRAKSKISVRDFTE
LLGQSGASAPQCRHGEPCALRTVKTEKNKGKKFWCCPRATRSVSWLPESAEQTEADAIDE
YNCGFFKWASK
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgccaggagatgaccgaataccgccgaaactcacgccgacgacgctgcgccttgtcacc
ttcaacgtcaatggcatcaagacgctcaaaaactactttccctggacgctggtgtcaaac
tactcccagatgctcaacatgatgaacatagacgtgatcaccttccaggagctcaaggtg
cagaggccggacgtcgatctgagtatcgccgatgttgacggctatcgtagctttatcagc
gtgcccatatccaagaaggggtactctggagtgggtgtttatgtgcgaaagcctcgtgac
gacgagcccgagatcctcaaaaagtgtctcaccgtggtgcgtgtcgaggagggcatcaca
ggaatactgccgcaccagaaaaaacacgtttcattcaaagaggcgtacagcgaccctgtt
cttcaacccacgtgcattggtggctatccagaccacaaaaacatgtacgacaagttccgc
aagctcgacagcgagggcagatgtgtgattatcgagctcaacttcaacatcgtcgtaatc
agcgtctactgtccggccaacagtctcggcacggacgagggcgaagagttccggttgctg
tttttgcggtgtctgtttgaacgggcgcgcaatttacgtgctatgggcaagaaagtggtc
gtaatgggcgacatcaacgtgtgcgtcgatctcatcgacagcgacgataccatcaagcag
ggcttcaaagagcgtcgactggtgaaggcccaagactacagcgactttgagacgctcaac
gcggaccaggtgctggctttcaagcactctgctccccatcgcgagctggtgaaccagtac
gttaaggacaccacaggaatgcggccagacggcgactcacacgttctgcacgacgtcgtg
cgcgagaaacagggccgccggctcaagatgtacacggtctggagcacgttcaagagcaac
cggccgctcaacgttgggtcccgcatcgatctcatccttgcttcgtcgcagctcgcgccc
ctggtcagccaggcagacatctggccgtttctgcacgggtccgatcattgtccggttcac
gtcgactttgaactggcagatctcgagttttcaccagaagaagaccgctcggccgagtac
gcagccaagtcgaactggtttgaggccaaaaacttttacggactgcatactaaaggtagt
atcgataagttcttccgcaaaagggagccaaaacgtcaggagaaagtagacagtgaacgg
gacgacgcagatggcggcagtgatagtgcaacgcccggctatagctctcgcaaaagagca
cgcaaagatcgtccagaccagctctctatctcggactttttcttcaggtctgactcgtct
ccaccgcctgccgaagacgacagagcaaaatcgaaaatttccgttcgcgatttcaccgag
ttgctcggccagtcgggcgcgtccgccccacagtgccgccatggcgagccgtgcgcgctg
cgaacggtcaagacggagaaaaataaggggaaaaagttctggtgctgtccacgcgcaaca
cgcagcgtgtcgtggttgcccgagtctgcagagcagacggaggcagacgctatagatgag
tacaactgtggtttcttcaaatgggcaagcaagtga
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