Ogataea parapolymorpha: HPODL_04890
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Entry
HPODL_04890 CDS
T08137
Name
(RefSeq) ATP-dependent RNA helicase DHH1
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
opa
Ogataea parapolymorpha
Pathway
opa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPODL_04890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
opa03019
]
HPODL_04890
03036 Chromosome and associated proteins [BR:
opa03036
]
HPODL_04890
Enzymes [BR:
opa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HPODL_04890
Messenger RNA biogenesis [BR:
opa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
HPODL_04890
mRNA degradation factors
5'-3' decay
Decapping complex
HPODL_04890
Chromosome and associated proteins [BR:
opa03036
]
Eukaryotic type
Gene silencing
piRNA pathway
HPODL_04890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Arcadin_1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
25774313
NCBI-ProteinID:
XP_013936716
UniProt:
W1QIE8
LinkDB
All DBs
Position
II:complement(644673..646028)
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AA seq
451 aa
AA seq
DB search
MSEDWKANLNLPKKDGRPQTDDVLATKGNTFESFHLKRELLMGIFEAGFEKPSPIQEEAI
PVALMGRDILARAKNGTGKTAAFVIPTLEKLKPKVNKIQALILVPTRELALQTSQVVKTL
GAHLGIQVMVTTGGTSLRDDIMRLHEPVHVLVGTPGRVLDLASRKLAEFDECRMFVMDEA
DKMLSREFKNIIEQILKFFPQSSSGKGNGYQSLLFSATFPLAVKSFMDQHLYKPYEINLM
DELTLKGITQYYAFVEEKQKLHCLNTLFSKLQINQSIIFCNSTNRVELLSKKITELDYSC
YYSHAKMPQAARNKVFHEFRQGKVRNLVCSDLLTRGIDIQAVNVVVNFDFPKTAETYLHR
IGRSGRFGHFGIAINLINWNDRFNLYKIEQELGTEIKPIPAEIDKSLYVVGQPESIPRPF
KLDQLPNGNERNHNRYNGQPTQPQTQKQVEY
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaagactggaaagcaaacctcaatctcccgaaaaaggacggccggccgcagaca
gacgacgtgctcgccaccaagggcaacacgttcgagtcgttccatctcaaacgagaactt
ctcatgggcattttcgaggcaggcttcgaaaaaccgtcgcccatccaagaagaagccatc
ccggtggcattaatgggcagagacattctcgctagagcgaaaaacggaacaggtaaaacg
gcagcctttgtgattccaactctggagaagctgaaaccgaaagtgaacaaaatacaggcg
ctaattctcgttcctactagagaattggctcttcaaacgtctcaggtcgtcaagactttg
ggagcccatctgggtatccaggtcatggtcactactggaggaacctcgctcagagatgat
attatgagattgcacgagccagtgcacgttctggtgggtactccaggaagagtgctggac
ctagcatctagaaaattggccgaatttgacgaatgtcgcatgtttgttatggacgaagcc
gacaagatgttatcgcgcgagtttaaaaacattatcgagcagatcctcaagttcttccct
cagtcgtcgtccggaaagggcaatggctaccagtcgctgctcttcagtgccacattccct
ctagccgtcaaatcatttatggaccagcacctctacaagccttacgaaattaatttgatg
gacgaacttaccttgaagggtatcacccagtattatgcctttgtggaggaaaagcagaaa
ctgcactgtctgaacactctcttttccaaactacaaatcaaccaatcgatcattttctgc
aactccaccaacagagtggagctgctctccaagaaaatcacagaacttgactactcttgc
tactactcccacgccaagatgcctcaggctgcaagaaacaaggtcttccacgagttcaga
caagggaaagtcagaaacttggtttgttctgacttgcttaccagaggtatcgatatccag
gcagtcaacgtggtggtgaatttcgacttcccaaagactgctgaaacttatttgcacaga
attggaagatctggtagatttggccatttcggtatcgccatcaacctcatcaactggaac
gatagattcaacttgtacaaaattgaacaagaactcggaaccgagatcaagcctattcct
gctgagatcgacaagtctctctacgttgttggtcagccagaaagtattccaagacctttc
aaactggatcaacttcccaacggaaacgagcgcaaccacaacagatacaacggtcaacca
actcaaccacagactcaaaaacaggtcgagtattag
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