Ogataea parapolymorpha: HPODL_05017
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Entry
HPODL_05017 CDS
T08137
Name
(RefSeq) hypothetical protein
KO
K14407
cleavage stimulation factor subunit 2
Organism
opa
Ogataea parapolymorpha
Pathway
opa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
HPODL_05017
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
opa03019
]
HPODL_05017
Messenger RNA biogenesis [BR:
opa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
HPODL_05017
U7-dependent histone pre-mRNA processing factors
HPODL_05017
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CSTF2_hinge
RRM_1
CSTF_C
Gal11_ABD1
Motif
Other DBs
NCBI-GeneID:
25774440
NCBI-ProteinID:
XP_013936853
UniProt:
W1QK81
LinkDB
All DBs
Position
II:<898169..>899473
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AA seq
434 aa
AA seq
DB search
MSTKPQPQAANNSSCVLYLGAIPYNWDVEIIKSVVCGSGPVVDVRCMMDNASKNKGFCFV
EYATPDAAARALQILSKIKIEGRKKLRIELSKEGLRNPVPGQKPELQLNRNFLPSNVILP
QEMLTANPNLPPQYNTYQQAVPSSAASSNSSGSTPSGTANNPFGSRFAGQNSDMLATISS
NPQLQQMVSQMISNGMDMTQIGNVVQQFNRQQSTTGSQANGSSQFIPTNLSMASQFLPLP
QQSQQPIYAKDKVSETLATIPPGILIELLAKLKLIVSGPSPNYAEAAQILHSNPKLAVAA
AQSLLLMGVVDLDVINQSMSAQPQATSAEPAVAPMAGSSAAPPTYSPFNPTSHQSTPSPA
STQQAPATTPSPVNLDNVNPDWKGLPRETINKLMHINEQEASLIVQVLKLTPQQIDILPD
NERVMANQIRAQYL
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaccaaaccccaaccgcaagccgccaacaacagctcgtgcgtgctgtacctgggc
gctattccttacaactgggacgtcgagatcatcaagtctgtcgtctgcgggtctggtcct
gttgttgatgtgcgttgtatgatggacaacgcttcgaaaaacaaagggttctgtttcgtt
gagtatgcaacgccggacgcggctgcccgcgcgctgcaaatcctgtccaagatcaagatc
gagggccgcaagaagctcagaatcgagctgtccaaagagggcctcagaaaccccgtcccg
ggccagaagccggagctccagctcaaccggaacttcctcccatccaacgtcattttgccg
caggagatgttgactgcaaacccaaacctaccgccgcagtacaacacctaccagcaagcc
gttccgtcgtcggccgcttcttccaactcgtcgggttcgacgccttccggcactgccaat
aatccgtttggaagcaggttcgcaggccagaacagcgatatgttggccaccatctcctcc
aacccgcagttgcagcagatggtgagccagatgatctcgaacggaatggacatgacccaa
atcggcaacgtggtccaacagttcaacagacaacagtcgaccaccggttcgcaggcaaac
gggtcgtcccagttcatccccaccaacctgtcgatggcttcccagtttttgccacttccg
caacagtcccagcagccaatctacgccaaggacaaggtctcggagaccttggctactatt
cctccaggtatactaattgagttgctggccaagttgaaactcattgtgtcggggccttcg
ccaaactacgccgaggcagcccagatcctgcactccaacccaaaattggctgtggctgcc
gcccagtcgttgctgctgatgggcgttgttgatctcgacgtgatcaaccaatcgatgtct
gcacagccccaggctacttctgcggagccggctgtcgctccaatggccggttccagcgct
gccccgcctacatactctccgttcaacccaacctcgcaccagtcaacaccgtctcctgcg
tctactcaacaggctcctgctaccactccttccccggtcaacctcgacaacgtcaaccct
gactggaagggtttgccacgggaaaccattaacaaattaatgcatatcaacgagcaggaa
gccagtctgattgtccaggttttgaagctgacaccgcagcaaatcgacattctgccagat
aacgagcgtgtcatggccaaccagattagagcccagtacttatag
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