Ogataea parapolymorpha: HPODL_05238
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Entry
HPODL_05238 CDS
T08137
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
opa
Ogataea parapolymorpha
Pathway
opa03020
RNA polymerase
opa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HPODL_05238
09124 Replication and repair
03420 Nucleotide excision repair
HPODL_05238
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
opa03021
]
HPODL_05238
03400 DNA repair and recombination proteins [BR:
opa03400
]
HPODL_05238
Enzymes [BR:
opa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HPODL_05238
Transcription machinery [BR:
opa03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
HPODL_05238
DNA repair and recombination proteins [BR:
opa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
HPODL_05238
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
MRNIP
Motif
Other DBs
NCBI-GeneID:
25774660
NCBI-ProteinID:
XP_013934141
UniProt:
W1QEB9
LinkDB
All DBs
Position
V:200369..204196
Genome browser
AA seq
1275 aa
AA seq
DB search
MSFNESMYDVPEYEMITTEDCWTVISSFFEEKGLVSQQLDSFEEFIESSIQELVLEDKKL
ILDQPAQHITEDDDVNRRYEITFGDIFLSKPSQTEADGTTSTLLPQEARLRNLTYSAPLY
VEMKKMVKESIDDDDVVTTQVVWYREGEITRYRNGEIEQDEMVIMPPNFDDDSDDIIEER
HGIKVHRSGAESQTIFIGKVPIMLKSKFCSLYGLSEDELYEIRECPFDMGGYFIINGSEK
VLIAQERSAANIVQVFKKSPPSPVSHIAELRSALEKGSRLISSIQVKLARGGASNFKSGG
VGRSIKATLPYIKADIPIVIVFRALGVIEDGDILQHICYDENDWQMLEMLKPCIEEGFLI
QSQEVALDYIGRRGNSIGIKKERRIQYAKDILQREFLPHISQDSGYETNKAYFLGYIVNR
LLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLSRDIYRYMQRCIERGDDFNI
VSAVKSNTITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGR
DGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMACASVGSASEPITYLLEEWGLE
PLSDYEPQEHKNATRVFLNGNWVGTHRDPAMLVETMRQLRRSGTISPEVSLIRDIREREF
KIFTDAGRIYRPLFIVDNDPDSEHKGELKLTKEHCRKILDREVEEIVQDEEFDDEGQPLG
PVQRVFGWDSLLSNGIIEYLDAEEEETVLIAMSPEDLISSASAEVQKAERDLDPAKRIKN
VVKAHSFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYSVRMDT
MANILYYPQKPLAKTQSMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLF
RSLFFRSYMDQERRSGISVVEEFEKPMRSSTLGFKQGTYEKLDDDGLIAPGVRVSGDDII
IGKTVPIPPDTEELGQRTKYHTKRDASTPLRTTESGIVDQVLLTTNAEGLKFAKVRMRTT
KVPQIGDKFASRHGQKGTIGITYRHEDMPFTAQGIVPDLIINPHAIPSRMTVAHLIECLL
SKVASMRGYEGDATPFTDLTVDAVSKLLRENGYQSRGFEVMYNGHTGKKLMAQVFFGPTY
YQRLRHMVDDKIHARARGPYQNLTRQPMEGRARDGGLRFGEMERDCMIAHGAAGFLKERL
MDSSDAFRVHICGICGLMSVIANLKKNQFECKSCKNKTNIYQIHIPYAAKLLFQELMSMN
IAPRLYTQKSGVTTR
NT seq
3828 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcaacgaaagtatgtatgacgtcccagaatacgagatgatcacgacggaagac
tgttggacagtcatctcgtcgttcttcgaggaaaaaggtcttgtctcgcagcagctggac
tcgttcgaagagtttatcgagtcgtctattcaggaactggttcttgaagataaaaaattg
atccttgatcaaccagcacagcatatcacagaggatgacgacgtgaacagaagatacgag
atcacgttcggagatatttttctttcaaaaccttctcagacagaagccgacggtaccacc
agtactcttctcccgcaagaggcaagattgagaaacctcacctactctgctcctttgtac
gtcgaaatgaagaaaatggtcaaagaaagtatagatgacgatgatgtggtgacgacgcaa
gttgtttggtacagagagggcgagatcaccagatatagaaacggcgagatcgagcaggac
gaaatggtgattatgcctcctaattttgacgatgacagcgacgatatcatagaagagaga
catggcatcaaggtgcatcgctctggtgctgagtcacaaacgattttcataggtaaggtg
ccgattatgttgaagtccaagttctgttctctgtatggtctttcggaggacgaactatat
gaaatcagagaatgtccatttgatatgggaggatacttcatcatcaacggttccgagaag
gttttgattgcccaggagagatctgcagccaatattgtgcaagttttcaaaaaatctcct
ccgtctccagtgtcccacattgctgagctcagatccgcgttggagaaaggttcgagactc
atttcctctatccaggtcaagcttgcaagaggaggtgcttccaacttcaagagcggtggt
gtggggagatcgatcaaggctactcttccatatataaaggctgatattccgatcgtgatt
gtgtttagagctttgggtgtgatcgaggacggagatattctgcagcacatttgttacgat
gagaatgattggcagatgcttgagatgttgaagccttgtatcgaagaaggatttttgatt
caatcgcaggaagtcgccctggattacatcggaagaagaggaaactcgattggtatcaag
aaagagagacgtatccagtacgccaaggacattttgcagcgtgagttccttcctcacatt
tcgcaagattccggttacgaaaccaataaagcttatttccttggttacattgtcaacaga
ctgcttttgtgcgctttagaaagaaaagaaccagatgacagagatcatttcggtaagaag
agattggaccttgctggtccgttgctagccaacctgttcagaattctattcagaaaactg
tctagagacatctacagatacatgcagagatgtattgagagaggtgacgacttcaacatt
gtcagtgctgtgaagtccaacaccatcacctctggtctgaagtactctctcgctaccgga
aactggggagagcagaagaaggccatgagcagtagagctggtgtctctcaggtgttgaac
agatacacgtactcttccacattatcgcatttaagaagaaccaacacgcctatcggaaga
gacggtaagctggccaagccacgtcaattgcataatacacactggggtctcgtctgtcct
gccgagactcctgaaggacaggcctgtggtctggtgaagaacttgtcgttaatggcttgt
gcctccgttggttccgcttccgagcctatcacttacttgctggaggagtggggattggaa
ccgttatctgactacgagccacaggagcacaagaacgcaacgagagtgtttttgaacgga
aactgggtcggaacgcacagagaccccgccatgttggttgaaactatgagacaactcaga
agaagtggtaccatttctccagaggtctctttaattagagacattagagagagagagttc
aagatctttaccgatgcaggaagaatctatagaccgctgttcattgtcgataacgatcct
gatagcgagcacaagggtgagttgaagttgacgaaagagcactgccgtaaaatcttggac
agagaagtggaggagattgtgcaggatgaggaatttgacgacgagggtcagcctttgggt
cctgttcaaagagtgttcggttgggactccttgttgagcaatggtattatcgagtatctt
gatgcagaggaggaggagacggttttgatcgccatgtctccagaagacctgatctcttct
gccagcgcagaagtacagaaggccgagcgtgacttggatcctgcgaagagaatcaaaaac
gttgtgaaggcccactcctttactcactgtgagattcatccgtcgatgattctcggtgtt
gctgcctcgatcattccgttcccagaccacaaccagtctccaagaaacacctaccagtct
gcgatgggcaagcaggccatgggagttttcttgacgaactacagtgtcagaatggacacc
atggcgaatatcttatactatccgcaaaagccattggcaaagacgcagtctatggagtac
ctgaaatttagagagcttcctgctggacagaatgccatagtggccattgcctgctactct
ggttacaatcaggaagactcgatgattatgaaccaatcgtctattgaccgtggtttgttc
agatcgctctttttcagatcctacatggatcaggagagaagaagcggtatatctgtggtg
gaggagtttgaaaagccaatgcgttccagcaccctgggcttcaaacagggcacctacgag
aagctcgacgatgacggattgattgctcctggtgttcgtgtttccggagacgatattatc
attggtaaaaccgttcctattccgccagacacggaggagcttggccaaagaactaaatac
cacacaaagagagacgcctcgactccactgagaacgaccgagagcggaatcgttgaccaa
gtgcttttgaccaccaacgccgaaggactcaagtttgccaaggtcagaatgagaaccacc
aaggtgccgcagattggagacaagtttgcctctagacacggtcagaagggtaccataggt
atcacgtatagacacgaagacatgccctttacggcacagggcattgttccggacctgatc
atcaacccgcatgccattccttcccgtatgacagtcgcccacttgatcgagtgtttgctg
tccaaggtggcctcgatgagaggttacgaaggagacgccactccattcacggacctgact
gtggatgcggtgtcgaaactcctaagagagaatggctaccagagcagaggtttcgaagtg
atgtacaacggacacaccggtaagaagctcatggcgcaggtgttctttggtcctacctac
taccagagactgagacatatggtggacgacaagattcacgccagagccagaggaccatac
cagaaccttacccgtcaacctatggagggtagagctagagatggaggactcagattcgga
gaaatggagcgtgactgtatgattgcgcacggtgcggccgggttcctgaaggagagactg
atggactcgtctgatgctttccgagtccacatttgtggtatctgtggtttgatgagcgtc
attgccaatttgaagaaaaatcaatttgaatgcaagtcttgtaagaataagaccaacatt
taccagatccatatcccatatgccgccaagttgttattccaggagctgatgagtatgaac
attgcgccaagactgtacacccaaaaaagtggagttaccaccagataa
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