Oceanimonas pelagia: PU634_00080
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Entry
PU634_00080 CDS
T09373
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
ope
Oceanimonas pelagia
Pathway
ope03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ope00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PU634_00080 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ope03019
]
PU634_00080 (rhlB)
Enzymes [BR:
ope01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PU634_00080 (rhlB)
Messenger RNA biogenesis [BR:
ope03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PU634_00080 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
WMC10796
UniProt:
A0AA50QC65
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All DBs
Position
complement(14252..15556)
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AA seq
434 aa
AA seq
DB search
MSKTHLTDTKFAQLGLQPQVLAGLETKGFHNCTPIQALSLPPLLAGKDIAGQAQTGTGKT
IAFLAATFNHLLTTPAPADRKTNQPRAIIMAPTRELAVQIHNDADTLSDSTGLRLGLAYG
GEAYEKQVEVLNAGVDILIGTTGRIIDFFKQKVISLDAIQVVVLDEADRMFDLGFIKDIR
FLFRRMPPAGQRQNMLFSATLSHRVQELAYEHMNSPEHVQVEPEQKTGVRIQEELFYPAQ
EDKMLLLLTLMEEEWPDKAIVFANTKHSCEEVYAWLHADGHRVGLLTGDVPQKKRLRILE
DFTGGALDILVATDVAARGLHIPDVTHVFNYDLPDDAEDYVHRIGRTGRAGASGRSISFA
CEEYVFNLPAVEAYIEHEIPVSKYDRDALLADVTPPRHIHHHRAGMNRNVRDRQGSGQRR
PAGNRRRRPQGSRS
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacacctcaccgacacaaaattcgcccagctgggcctgcagccacaagtg
ctggccgggctggaaaccaagggatttcacaactgcacgcccattcaggcgctgtcgcta
ccgccactgctggcgggcaaggacatcgccgggcaggcccagaccggtaccggtaaaacc
atcgcctttctcgccgccacctttaaccatctgctgaccacccccgctcccgccgaccgt
aaaaccaatcagccccgcgccatcatcatggccccgacccgggaactggcggtacagatc
cacaacgatgccgacactctgagcgacagcaccgggctcaggctgggactggcctatggc
ggcgaagcgtacgaaaagcaggtggaagtgctgaacgccggggtcgatattctgatcggt
accaccggccgcatcatcgatttcttcaaacagaaggtcatcagcctggacgctattcag
gtagtggtgcttgacgaagcggaccgcatgttcgacctgggcttcatcaaggacattcgc
tttctgtttcgccgcatgccgcccgccggccagcgccagaacatgctgttttccgccacc
ctgtcgcacagggtgcaggagctggcctacgagcacatgaacagcccggagcatgtgcag
gtggagccggaacagaaaaccggggtgcgcattcaggaggaattgttctacccggcccag
gaagacaagatgctgctgctgctcaccctgatggaagaggaatggcccgacaaggccatc
gtctttgccaacaccaagcacagctgcgaagaagtgtacgcctggctgcatgccgacggc
caccgcgtaggcctgctcaccggcgacgtgccccagaaaaagcgcctcagaatcctggaa
gactttaccggtggagccctcgacattctggtggccaccgatgtggccgcccgcggcctg
cacattcccgacgtcacccacgtgttcaactacgatctgcccgacgacgcggaagactat
gtgcaccgcattggccgcaccggccgggccggggccagcggtcgctccatcagctttgcc
tgcgaggaatacgtgtttaacctgccggcggtggaagcctatatcgagcatgaaattccg
gtcagcaaatacgatcgcgacgctctgctcgccgacgtcaccccgccccgtcatattcat
caccacagggccggcatgaaccgcaatgtgcgcgatcgccaggggagtggccagcgccgt
cctgccggcaaccgccgccgccggcctcagggcagccggagctga
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