Oceanimonas pelagia: PU634_01450
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Entry
PU634_01450 CDS
T09373
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
ope
Oceanimonas pelagia
Brite
KEGG Orthology (KO) [BR:
ope00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ope03009
]
PU634_01450 (srmB)
Enzymes [BR:
ope01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PU634_01450 (srmB)
Ribosome biogenesis [BR:
ope03009
]
Prokaryotic type
rRNA helicases
PU634_01450 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
Helicase_C_2
AAA_30
AAA_22
UvrD-helicase
SNF2-rel_dom
Sacchrp_dh_NADP
Terminase_6N
Motif
Other DBs
NCBI-ProteinID:
WMC11059
UniProt:
A0AA50KP67
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All DBs
Position
complement(300442..301740)
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AA seq
432 aa
AA seq
DB search
MSSMTFEQLELDPILVRALARMGYARPTTIQSQVIPEAMSGRDIMASAPTGTGKTAAFLL
PACQHLLDFPRRQAGPARVLVLTPTRELAKQIADDAKALLKDTGLRVETITGGVDAEKHL
PALTKTTDIVVATPGRLLQYIDEESFDSRDIEMLILDEADRMLDMGFIQDVDRIAAEARW
RRQTMLFSATLEGRGLMKFAADILKEPVELSAEPPRSERKKITQWLHLADDAEHKFALLR
HLLRQPDVTRSIVFVKTRERLMELASRLQQEGLDNAWLRGEMDQEKRFEALRRFRNGKVN
ILVATDVAARGIDLPEVSHVINYDMPRTADVYVHRIGRTGRAGRKGIAISLVEAHDMPMV
VKVERYTEQKLKRRVIDELRPKHKEATVAVRKKKEADGKGKKAAQPKKKVRLRDKKAKGQ
PRWLKDKGGREE
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtatgacctttgagcaactggagctggaccccattctggttcgcgccctggcc
cgcatgggctatgccagacccaccaccattcagagccaggtcatacccgaagccatgagc
ggccgggacatcatggcctcggcccccaccggcaccggcaagaccgccgcctttctgctg
ccggcctgccagcacctgcttgactttccccgccgccaggccggcccggcccgggtgctg
gtgctcacccccacccgggagctggccaagcagattgccgacgacgccaaggccctgctc
aaggacaccggcctgcgggtggaaaccattaccggcggcgtggatgcggaaaagcacctg
ccggccctgaccaagaccaccgacattgtcgtggccaccccgggacgcctgctgcaatac
atagacgaagaatccttcgacagccgcgatatcgaaatgctgatcctcgacgaagccgat
cgcatgctcgacatgggctttattcaggacgtggaccgcattgccgccgaggcccgctgg
cgccgccagaccatgctgttttccgccaccctggaaggtcgcggcctgatgaagtttgcc
gccgatattctcaaggagccggtagagctgtctgccgagccaccgcgcagcgagcgcaag
aaaatcacccagtggctgcacctggccgacgacgccgagcacaagtttgccctgttacgc
cacctgttgcgccagcccgacgtcacccgcagcatcgtgttcgtgaagacccgggaacgg
ctgatggaactggccagccggctgcagcaggaaggcctggacaatgcctggctgcgcggc
gaaatggatcaggaaaaacgctttgaggccctgcgccgctttcgcaacggcaaggtcaac
attctggtggccaccgacgtcgccgcccggggcattgatctgcccgaggtcagccatgtg
atcaactacgacatgccgcgcaccgccgacgtttacgtacaccgtatcggccgcaccggc
cgcgccggccgcaagggcattgccatcagcctggtggaggcccacgacatgcccatggtg
gtcaaggtggagcgctacaccgagcaaaagctcaagcgccgggtgatcgacgagctgcgt
cccaaacacaaggaggcgacggtggcggtgcgcaaaaagaaagaagccgacggcaagggc
aaaaaggccgcccagcccaagaagaaggtgcgcctgcgcgacaagaaggccaagggacag
ccccgctggctgaaggacaagggcggccgggaagaataa
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