Oceanimonas pelagia: PU634_02700
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Entry
PU634_02700 CDS
T09373
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ope
Oceanimonas pelagia
Pathway
ope03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ope00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PU634_02700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ope03019
]
PU634_02700
Enzymes [BR:
ope01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PU634_02700
Messenger RNA biogenesis [BR:
ope03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PU634_02700
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
WMC11294
UniProt:
A0AA50KPE9
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All DBs
Position
complement(587122..588525)
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AA seq
467 aa
AA seq
DB search
MSFASLGLNEKLVQAIHECGYTQPTPIQQQAIPLVLKGGDLLAGAQTGTGKTAGFGLPML
QRLSETQARPLANGRAPVRALVLTPTRELAAQVEENLRAYARHTNLRTLVMFGGVSINPQ
MKALGRKVDVVVATPGRLLDHVSQRSIDLSRIEMLVLDEADRMLDMGFIRDIRRILALLP
RQRQNLLFSATFSDDIKALAEDLLNQPEHIEVARRNATAETIAQRFFEVDKGRKRALLSY
HIGHHNWRQVLVFTRTKHGANRLAEQLSKDGLPAMAIHGNKSQGARTKALSEFKSGGIRV
LVATDIAARGIDISELPHVVNYELPHVAEDYVHRIGRTGRAGSNGEALSLVSAEEKPLLK
AIERLIKQTATLERVAGFEPDPNAPVTPLEDTRGGNRGRNGGGQRSGGQRNGGNGGQRNG
QRAGGNRSGGNGQRSGQRANGNRSGDGDGPRAGAPRRRSRPQAEHSS
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgcttccctcggcctgaacgaaaagctcgttcaagccattcacgaatgtggt
tacacccagccgacccccattcagcagcaggccattccgctggtgctgaagggcggtgac
ctgctcgccggcgcccagaccggcaccggcaagaccgccggcttcggcctgcccatgctg
cagcgcctgagcgaaacccaggcccgccccctggccaacggccgggcgccggtgcgcgct
ctggtgctcacgcccacccgcgagctggccgcccaggtggaagaaaacctgcgcgcttat
gccaggcacaccaacctgcgcaccctggtgatgttcggcggcgtcagcatcaacccgcaa
atgaaagccctgggccgcaaggtggacgtggtggtggccaccccgggccggctgctggat
cacgtgtcccagcgctccatcgatctgtcccgcattgagatgctggtgctggatgaggcg
gatcgcatgctcgacatgggttttattcgcgacattcgccgcattctggcgctgctgccc
agacaacggcagaacctgctgttttccgccaccttctccgacgacatcaaggccctggcc
gaagatctgctgaaccagcccgagcacattgaagtggcccgccgcaacgccaccgccgag
accattgcccagcgcttttttgaggtggacaagggccgcaagcgcgccctgctcagctac
catatcggccatcacaactggcgtcaggtgctggtgtttacccgcaccaagcacggcgcc
aaccgcctggccgaacagctgagcaaggacggcctgccggccatggccattcacggcaac
aagagccagggtgcccgcaccaaggccctgagcgagttcaagagcggcggcattcgcgtg
ctggtggccaccgacatcgccgcccgcggcatcgacatcagcgagctgccccacgtggtc
aactatgagctgccccatgtggcggaagactatgtgcaccgcattggccgcaccggccgg
gccggcagcaacggcgaagcgctgtcgctggtgagcgccgaggaaaaaccgctgttgaag
gccattgaaaggctcatcaagcagaccgccacgctggagcgggtggccggtttcgagccc
gatcccaacgccccggtgactccccttgaagacacccgcggcggcaaccgtggccgtaat
ggtggcggccagcgctctggcggtcagcgcaatggtggtaatgggggccaacgcaatggc
cagcgtgccggtggcaaccgcagcggcggcaacggccaacgcagcggtcagcgtgccaat
ggcaaccgcagcggtgacggcgacggcccgcgcgccggtgccccccgccgccgctcacgc
cctcaggccgagcacagcagctga
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