Oceanimonas pelagia: PU634_06125
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Entry
PU634_06125 CDS
T09373
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
ope
Oceanimonas pelagia
Pathway
ope03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ope00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PU634_06125 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ope03400
]
PU634_06125 (recB)
Enzymes [BR:
ope01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PU634_06125 (recB)
DNA repair and recombination proteins [BR:
ope03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PU634_06125 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_25
AAA_11
AAA_30
Motif
Other DBs
NCBI-ProteinID:
WMC11943
UniProt:
A0AA50KRJ4
LinkDB
All DBs
Position
1292601..1296215
Genome browser
AA seq
1204 aa
AA seq
DB search
MSASRPLALTFPLHGSRLIEASAGTGKTFTISALYLRLVLGHGGEHGFARELLPPEILVV
TFTEAATQELRDRIRARLVEAAAVFRGEANGDELLITLRDDVDPEQWPGCAHRLDIAAQW
MDEAAVSTIHGWCQRMLREHAFDSGSLFTQTLQTDHSELLAEVVRDYWRRQCYPLAGTAL
DWVMAQWKTPNELLHALRPLLHEPGEAEGELGELLAQSLRERAQALAALKAPWRAWLDEI
EGILQGAIAAKQVHGKWLQARRTEGWLAALRAWTDGDDIALPLSEAAVYRLTPEGITEAW
KDTAQAPGHPAFDAMQTLPAQLAALAAPLEAPLRHAAAWVRRRFELEKRRRAEMGFDDML
TRLDEALAGENGPRLAEVIRRQFPVALIDEFQDTDPLQYRIFDTIYRVADNSPDSGLFMI
GDPKQAIYAFRGADIYTYLSARAATEGRHYSLDTNFRSSRPMVSAVNRLFERAEAHADGA
FLFRDGHDNPLPFVPVKARGRGEQWWCEGAPQPALTLWQLDSDDGAPMSGSAYVEQMAAR
CASHMTHLLNLGGAGRAGFAGECGLAPVQPSDMAVLVRSFREAQAIRTALAARGVRSVYL
SDKDSVFASPEAGDLLHWLRACAEPEQDGRLRAALATATLGLSLAELERLNQDERHWEAR
VMQFRDYRRIWQRQGVLPMVHRLLHDFGLPGRLLRATEGERSLTNLLHLAELMQQAAASL
DGEQALIRHLAECMEGERQAADEQVLRLESDDALVRVVTIHKSKGLEYPLVFLPFICSFR
ESGSRGGPVQLHEHGRKRLVLSPGEQQKARAERERLGEDLRLLYVALTRARHACWLGLAN
IRVGNARASRLHDSAMGRLLGGGAVLTGSLHDWLGELACEHTALCPAPEVNETPLLSAGA
TPAAPVWATPARPAAEHWWIASYSALLDRHDAGKRFDDAAPERPEAGKAGDDDLQRPFVP
LRPGETPSLHRFPRGPAAGTFLHGLLELALNEGLAGQPEALASQLARRCQLRGMAEWAGP
LTDWLQGLLATPLFAHGPALQGLACFQSEMEFWLEVSRVPIAELDALVRRHILPQQDRPA
LAPGRLNGMLKGFIDLVFEHDGRYYVVDYKSNWLGPSDADYTGTAMAAQILQHRYDLQYV
LYVLALHRQLLLRLPGYDYDTHMGGALYAFVRCPGAVFADRPPRELIDTLHGLCGGEHPE
ETLP
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcatcgcgtccgctggcgctgacctttcccctgcatggcagccggctgattgag
gccagcgccggcaccggcaagaccttcaccatttcggcgctgtatttgcgcctggtgctg
ggccacggcggtgagcacggcttcgcccgggagttgctgccgccggaaattctggtggtc
acctttaccgaggccgccacccaggagctgcgggatcgcatacgcgcccggctggtggag
gcggcggcggtgtttcgcggcgaggccaacggcgacgagctgctcattaccctgcgggat
gacgttgaccccgagcagtggcccggctgtgcccaccgcctcgacattgccgcccagtgg
atggacgaggcggcggtgtccaccattcacggctggtgtcagcgcatgctgcgtgagcac
gcctttgacagcggcagtctgtttacccagaccctgcagaccgatcacagcgagctgctg
gcggaagtggtgcgcgactactggcgccgccagtgttacccgctggcaggcacggccctc
gactgggtgatggcgcagtggaaaaccccgaatgaattgctgcacgccctgcggccgttg
ctgcacgagcccggcgaggccgagggcgagctgggcgagctgctggcacagagtctgagg
gagcgtgcgcaggcgcttgccgcgctcaaggcgccctggcgagcctggctggatgagatt
gaggggattctgcagggcgcgatcgcggcgaaacaggtgcacggcaagtggctgcaggcc
aggcggaccgagggctggctggccgctctgcgcgcctggaccgacggtgacgacatcgcc
ttgccgctgagtgaggcggcggtttaccggctgaccccggagggcattacggaagcctgg
aaagacacggcccaggcgccgggccaccccgcctttgacgccatgcagaccctgcccgcg
cagctggcggctctggccgcgccgctggaggcgcccctgcgtcatgccgccgcctgggtg
cgccggcgctttgaactggaaaaacgccgccgggccgaaatgggttttgacgacatgctt
acccggctcgatgaggcgctggcgggagagaacgggccgcggctggcggaggtgatccgg
cggcagtttccggtggcgctgatcgacgagtttcaggacacggatccgctgcaataccgt
attttcgacaccatttaccgcgtggcggacaacagcccggacagcggcctgttcatgatc
ggtgatcccaagcaggccatttatgcctttcgcggcgccgatatttacacctatctgtcg
gcccgggccgccaccgaggggcgtcattacagtctggacaccaactttcgctcgtcccgg
cccatggtgtcggcggtgaaccggctgtttgagcgggccgaggcccatgccgacggcgcc
tttctgtttcgtgacggccacgacaatccgttgccctttgtgccggtcaaggcgcggggc
aggggggaacagtggtggtgcgagggcgcaccgcaaccggcactgaccctgtggcagctg
gacagcgacgacggcgcacccatgtccggcagtgcctatgtggagcagatggcggcgcgc
tgcgccagccatatgacccatctgctcaacctgggcggcgccggtcgggccggctttgcc
ggtgagtgcgggctggcgccggtgcagcccagcgacatggcggttctggtgcgcagcttt
cgcgaggcccaggccatacgcaccgcgctggcggcccggggcgtgcgcagcgtgtatctg
tccgacaaggactcggtgttcgccagtcccgaggccggcgatctgctgcactggctgcgc
gcctgcgccgagccggagcaggatggccggctgcgggcggcgctggccaccgccaccctg
ggcctgagcctggcggagctggagcggctcaatcaggacgagcgccactgggaggccaga
gtgatgcagtttcgcgactatcgccggatctggcagcgccagggggtgctgcccatggtg
caccggctgttgcacgacttcggcctgccgggccggctgttgcgggccaccgagggcgag
cgcagccttaccaacctgctgcacctggccgaactgatgcagcaggccgccgccagcctc
gacggtgaacaggcgttgatccgccacctggccgagtgcatggaaggggagcgccaggcc
gccgacgagcaggttctgcggctggaaagcgatgacgccctggtgcgggtggtgaccatt
cacaagtccaaggggctggaatacccgctggtgtttctgccctttatctgctcgttccgg
gaaagcggcagccggggcggcccggtgcagttgcacgagcatggccgcaagcggctggtg
ctgagccccggcgagcagcaaaaggcccgggccgagcgggagcggctgggcgaggatctg
cgtttgctttatgtggcgctgacccgggcccgccacgcctgctggctggggctggcgaac
attcgggtgggcaatgccagggcctcgcgcctgcacgactcggccatgggccggctgctg
gggggcggggccgtgctgaccggatcgctgcatgactggctgggggagctggcctgtgag
cacaccgccctgtgcccggcgcccgaggtgaacgaaacgccgctgctgagtgccggggcc
accccggcggcgccggtgtgggccaccccggcccggcccgccgccgaacactggtggatt
gcgtcctacagtgcgttgctggaccggcatgatgccggcaagcgctttgacgatgccgcc
ccggagcggcccgaggcgggcaaggccggtgacgacgatctgcaacgcccctttgtgccg
ctgcgccccggtgaaacccccagcctgcaccgctttccccgcggaccggcggcgggtacc
tttctgcacggcctgctggagctggcgctgaacgaggggctggccggccagcccgaggcg
ctcgccagccagctggcccggcgctgccagctgcggggcatggcggagtgggccgggccg
ctgaccgactggctgcagggcctgctggccacgcccctgtttgcgcatggcccggcgctg
caggggctggcttgctttcaatcggaaatggagttctggctggaggtgagccgggtgccc
attgccgagctggatgccctggttcgacgccatattctgccacagcaggatcgcccggcg
ctggccccgggccggctcaacggcatgctcaagggctttatcgatctggtgtttgagcat
gatggccgctattacgtggtggattacaaatcgaactggctgggcccgagtgacgccgat
tacacagggacggccatggcagcgcagatccttcagcaccgttacgatctgcaatacgtg
ctttatgtgctggcgctgcatcgtcagttgctgctgcgcctgcccggttacgactacgac
acccacatgggcggagccctgtatgcctttgtgcgctgccccggcgcggtgtttgcggat
cggccgccccgtgaactgatagacaccctgcatgggctgtgcggtggtgaacaccccgag
gagacattgccatga
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