Oceanimonas pelagia: PU634_10805
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Entry
PU634_10805 CDS
T09373
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ope
Oceanimonas pelagia
Pathway
ope03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ope00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PU634_10805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ope03019
]
PU634_10805
03009 Ribosome biogenesis [BR:
ope03009
]
PU634_10805
Enzymes [BR:
ope01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PU634_10805
Messenger RNA biogenesis [BR:
ope03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PU634_10805
Ribosome biogenesis [BR:
ope03009
]
Prokaryotic type
rRNA helicases
PU634_10805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
WMC09606
UniProt:
A0AA50KM51
LinkDB
All DBs
Position
complement(2265237..2267015)
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AA seq
592 aa
AA seq
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MTNTSVVPGFADLGLAPAVLQALTDAGYEQPSAIQAAAIPTLLTGRDVLGLAQTGTGKTA
AFALPMLSRISGGNAYPQVLVLAPTRELAIQVAESFENYAKYQKDIRIVSIYGGQAYDSQ
IRALKRGVDIVVGTPGRVMDHMRRGTLKLDSLQALVLDEADEMLRMGFIDDVEWILEHTP
ETRQIALFSATMPPAIQRVAQKYLKDPQEVRIANKTRTNASIRQRYWFVRGMPKQEALCR
LVETEDMDACLVFVRTRKDAEDVAELMSREGHACEALHGDIPQKLREKVVDRLKNGRLNI
LVATDVVARGLDVERISHVINYDMPHDNESYVHRIGRTGRAGREGDAILFVTGREKRSLY
NLERHTRQPIEEMSMPTAAEINKIRAERFKARIRTSVDADEKALAPFVEMVNELQADGMD
TAALAAGLARLLQGDRPLFVEDKPMAARRPDVRESRERFERSDRPERGERPRRGGKDEVS
GVTMETFRVDVGRVHGVKPGHLVGAIANEADLESRYIGQIQIHDDFSTVDLPEGIPAELQ
QILQKVRVCQRPLNLAKYEGGPLPRRQFRNKDDRGGDRGKFRPRRNDKRLNG
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgacaaatacctctgtagtacccggttttgccgatctcgggctggcgcctgccgttctt
caagctctgaccgatgccggttatgagcagccttctgccattcaggccgccgccattccg
actctgctgaccgggcgcgacgtgctgggtctggcccagaccggcaccggcaagaccgcc
gcctttgccctgccgatgctgagccgcatcagcggtggcaacgcctatccgcaggtgctg
gtgctggccccgacccgggagctggccattcaggtggccgagtcctttgaaaactacgct
aaataccagaaagacattcgcatcgtgtccatctacggtggccaggcctacgacagccag
atccgtgctctcaagcgcggtgtcgacatcgtggtgggcacccccggccgggtcatggat
cacatgcgccgcggcaccctcaagctggacagcctgcaggcgctggtgctggacgaagcc
gatgaaatgctgcgcatgggctttatcgacgacgtggaatggattctggagcacactccg
gagacccgtcagatcgccctgttctccgccaccatgccaccggccattcagcgcgtggct
cagaaatacctgaaagatccgcaggaagtgcgcatcgccaacaagacccgcaccaacgcc
agcattcgccagcgttactggttcgtgcgtggcatgcccaagcaggaagccctgtgccgt
ctggtggaaaccgaagacatggacgcctgcctggtttttgtgcgcacccgcaaggacgcc
gaagacgtggccgagctgatgagccgcgaaggccatgcctgtgaagccctgcacggcgac
attccccagaagctgcgggaaaaagtggtggatcggctgaagaacggccgcctgaacatt
ctggtggccaccgatgtggtggcccgtggtctggatgtggagcgcatcagccacgtgatc
aactacgacatgccccacgacaacgagtcttatgtgcaccgcatcggccgtaccggtcgc
gccggccgtgaaggcgacgccattctgtttgtgaccggccgtgaaaagcgcagcctgtac
aacctggagcggcacacccgccagcccatcgaagaaatgagcatgcccaccgccgccgag
atcaacaagatccgcgccgagcgtttcaaggcccgcattcgcaccagcgtggacgccgac
gaaaaggcgctggcgccgtttgtggaaatggtcaacgagctgcaggccgatggcatggac
accgccgccctggccgccggtctggcccgcctgctgcaaggcgatcgcccgctgttcgtg
gaagacaagccgatggcggcccgtcgccccgacgtgcgtgaaagccgtgagcgctttgag
cgcagtgatcgccccgagcgtggcgagcgcccccgtcgtggcggcaaggatgaggtatcc
ggtgtgaccatggaaaccttccgcgtcgacgtgggccgggtgcacggcgtcaagccgggc
cacctggtgggtgccattgccaacgaggcggatctggagtcccgttacatcggccagatc
cagatccacgacgatttctctaccgtggatctgcccgagggcattcccgccgagctgcag
cagatcctgcaaaaggtgcgggtgtgccagcgtccgctgaacctggccaaatacgagggt
ggcccgctgccccgtcgccagttccgcaacaaggacgaccgcggcggtgaccgtggcaag
ttccgcccccgtcgcaacgacaagcgcctgaacggctga
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