Oceanimonas pelagia: PU634_15365
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Entry
PU634_15365 CDS
T09373
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
ope
Oceanimonas pelagia
Brite
KEGG Orthology (KO) [BR:
ope00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ope03016
]
PU634_15365
Enzymes [BR:
ope01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PU634_15365
Transfer RNA biogenesis [BR:
ope03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
PU634_15365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1CSD-TOTE-2
S1
Motif
Other DBs
NCBI-ProteinID:
WMC10439
UniProt:
A0AA50KMS7
LinkDB
All DBs
Position
3200008..3201984
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AA seq
658 aa
AA seq
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MFQDNPLLAQLKQQIRDTLPTKEGMVKGTSKGFGFLEVSDKESYFIPPPHMKKVMHGDRI
TAVLRTENDKELVEPETLLEPGLTRFVARVKWFRDRLNIVPDHPLMKDAIKARTVKGMND
KDLKEGDWVLADLKRHALKDNGFFAEVVELIAGVDDPIAPWWVVLARNSLAKQAPQDREQ
WEPLEDTLPRQNLTEVPFFTIDSESTQDMDDALSVKKRDNGWELTVAIADPTAYVAHDSE
LDKIAAERAFTVYLPGRNIPMLPRTLADELCSLKEGEERHALCARIHIDADGKVADDAEF
FAARIRSHARLAYNKVSDWVEGTGDWQPESEIIAEQLRELTALTRVRSAWRSEHAIVFKD
RPDYRFELDEASNVVAIHADHRRIANQMVEECMIAANLACGNWLTKHCGTGVFNVHAGFD
EEKLAQLQELLKEHEAPVDPDRLTTLEGFCELRRWLDSRDTSYLDNRVRRFQSFAAMSVT
PGEHYGLGLDAYATWTSPIRKYGDIINHRLIKAILAEKAHDAHAPNAELAVHLSEQRRMH
RRAERDIADWLYVRYLQPAVANGHVFDAEIIDIGRGGVKLRLQENGAVVFMPSSLILPNR
DRLECSWDDGRVYLDKQPVYELGQHIQVILTEAIEDTRSLIAKPAIPLVPEKQEKPAS
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagacaaccccctgctggcccagctcaagcaacaaatccgcgacacccttccc
accaaggaaggcatggtcaaaggcacctccaagggcttcggctttctcgaagtcagcgac
aaggaaagctatttcattccacccccgcacatgaaaaaggtcatgcacggcgatcgcatc
accgccgtgctgcgcaccgagaacgacaaggagctggtggagcccgagaccctgctggag
cccggcctgacccgctttgtggcccgggtgaagtggttccgtgaccggctcaatatcgtt
cccgatcacccgctgatgaaagacgccatcaaggcccgcaccgtcaaggggatgaacgac
aaggacctgaaggaaggcgactgggtactggccgatctcaagcgccacgccctgaaagac
aacggctttttcgccgaagtggtggagctgatcgccggcgtggacgatcccatcgccccc
tggtgggtggtgctggcccgcaacagcctggccaagcaggccccccaggaccgggagcag
tgggaaccgctggaagacaccctgccccgccagaacctgaccgaggtgccctttttcacc
atcgacagcgagtccacccaggacatggacgacgccctcagcgtgaaaaagcgggataac
ggctgggagctgaccgtggccattgccgatcccaccgcctatgtggcccacgacagcgag
ctggacaagatcgccgccgagcgcgcctttaccgtatatctgccgggccgcaacattccc
atgctgccccgcaccctggccgacgagctgtgctccctgaaggaaggggaagagcgccac
gccctgtgcgcccgcattcacattgacgccgacggcaaggtggccgacgacgccgaattt
tttgccgcccgcattcgctcccacgcccgcctggcctacaacaaggtgtccgactgggtg
gaaggcaccggcgactggcagcccgagagcgaaatcattgccgagcagttgcgcgagctg
accgccctcacccgggtacgcagcgcctggcgcagcgagcacgccatcgtgttcaaggac
aggcccgactaccgctttgaactggacgaggccagcaacgtggtggccattcacgccgat
caccgccgcattgccaaccagatggtggaagaatgcatgatcgccgccaacctggcctgc
ggcaactggctgaccaaacactgtggcaccggtgtgttcaacgtgcacgccggctttgac
gaagaaaaactggcccagctgcaggagctgctgaaggagcatgaagccccggtggatccg
gacaggctcaccaccctggaaggcttctgcgagctgcgccgctggctggactcccgcgat
accagctacctggacaaccgggtgcgccgcttccagtccttcgccgccatgagcgtaacc
ccgggtgagcactacggcctgggcctggacgcctacgccacctggacctcgcccattcgt
aaatacggcgacatcatcaaccaccgcctgatcaaggccattctggccgaaaaggcccat
gacgcccacgcccccaacgccgagctggcggtgcacctgtcggagcagcgccgcatgcac
cgccgtgccgagcgcgacatcgccgactggctgtatgtgcgctacctgcagccggcagtg
gccaacggccatgtatttgatgccgagatcatcgacattggccgtggcggcgtgaaactg
cgcctgcaggaaaacggcgccgtggtattcatgccttcttccctgatcctgcccaaccgg
gatcggctggagtgcagctgggatgacggccgcgtctacctcgacaagcagccggtatac
gaactgggccagcacattcaggtgatcctcaccgaagccattgaagacacccgctcactc
atcgccaagccggccattccgctggtaccggagaagcaggaaaaacccgcttcctga
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