Oceanisphaera profunda: CBP31_00275
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Entry
CBP31_00275 CDS
T04856
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
opf
Oceanisphaera profunda
Brite
KEGG Orthology (KO) [BR:
opf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
opf03016
]
CBP31_00275
Enzymes [BR:
opf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
CBP31_00275
Transfer RNA biogenesis [BR:
opf03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CBP31_00275
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
HTH_ABP1_N
Motif
Other DBs
NCBI-ProteinID:
ART81258
UniProt:
A0A1Y0D163
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All DBs
Position
complement(51351..52445)
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AA seq
364 aa
AA seq
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MTYTLITDTPALADFCNTDARVLALDTEFIRTRTFFAKPGLYQLFDGQQTVLIDPVIVPD
LSPLWQLLQDPARICVLHAGGEDLELLQHQSGGLPAHIHDTQLAAAFLGIGAQIGFAPLV
ENLLDVHLDKAHSRTDWLARPLSSAQLNYAADDVIYLLPVYEQLMERLSNKGLMAWFEQE
CERVVKRRSESVDPQFAYLDMKNAWTLDRQALAILQQLCQWRLTEARSRDLAVNFVVKEA
HLFRVAERAPLTLADLNRLDLDPMEIRRHGETLLKLVQVALASPQSWPEPVQRLIDFPDY
KAELKRIKGLIDVAGEQAEIPSDVIASKRLIHQYLSWKWRLEENKDMTPILLQGWRGELL
AGQL
NT seq
1095 nt
NT seq
+upstream
nt +downstream
nt
atgacttatacattgatcaccgataccccagcgctcgctgacttctgtaataccgatgcc
cgcgtgctggcgctggatacggaatttattcgcacccgcacttttttcgctaagcctggt
ttataccaactgtttgatggccagcaaaccgtcttgattgatccggtcatcgtgcctgac
ttatcgccgttatggcagctattacaagatcctgcgcgtatttgtgtgttgcatgccggt
ggcgaagaccttgagctattacagcatcaaagtggcggcttgccggcgcatattcatgac
acgcaattggccgccgcgttcttaggcataggtgcgcaaattggttttgcgcccttggta
gaaaacttgctcgatgtgcatttggataaagctcattcgcgcaccgattggctggcgcgc
ccgttatcgagcgcacaactgaattatgcagcggatgatgtgatttacctgcttccggtg
tatgaacagttaatggagcgcttaagtaataaaggtctcatggcgtggtttgagcaagaa
tgtgagcgagtcgtaaaacgacgcagtgaaagtgtcgacccacagtttgcttatctcgat
atgaaaaatgcctggacactagaccgccaagccttggctattttgcagcagctttgccaa
tggcgcctgactgaggcgcgcagtcgtgacttggccgtaaacttcgtggttaaagaagcg
cacctgtttagagtggcggagcgggctcccttaacgctggcagatttaaacagattggat
ttagacccgatggaaattcgccgtcacggggagacgctgctcaagttagtgcaagtggcg
ttagccagtccgcaatcgtggccagagccggtacagcgtttaattgattttcctgattat
aaagccgagttaaaacgtattaagggcttgattgatgtggctggcgagcaggctgagatc
ccgagcgatgtgatcgcttcaaagcgcttaattcatcagtatctaagctggaagtggcgt
ttagaagaaaataaagatatgacacctatcttattgcaaggctggcgcggagagctgtta
gcagggcagttgtga
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