Oceanisphaera profunda: CBP31_03655
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Entry
CBP31_03655 CDS
T04856
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
opf
Oceanisphaera profunda
Pathway
opf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
opf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CBP31_03655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
opf03019
]
CBP31_03655
03009 Ribosome biogenesis [BR:
opf03009
]
CBP31_03655
Enzymes [BR:
opf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CBP31_03655
Messenger RNA biogenesis [BR:
opf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CBP31_03655
Ribosome biogenesis [BR:
opf03009
]
Prokaryotic type
rRNA helicases
CBP31_03655
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Cas3-like_C_2
AAA_19
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ART81829
UniProt:
A0A1Y0D2U6
LinkDB
All DBs
Position
complement(832226..834007)
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AA seq
593 aa
AA seq
DB search
MTNSTLVLAENAPAFTELGLAPEILQALTDAGYVTPSAIQAAAIPTLLEGRDVLGLAQTG
TGKTAAFALPLLSTITGGNNTPQVLVLAPTRELAIQVAESFEGYAKYRKDIRIMSIYGGQ
AYDTQIRSLKRGVDIVVGTPGRVMDHMRRGTLKLDNLKALVLDEADEMLRMGFIDDVEWI
LEQTPATRQIALFSATMPPVIQRVAQKYLNNPKEVRIENKTRTNSSIKQRYWFVRGMNKH
EGLCRLVETEKMDAMLVFVRTRKDAEDLAEMMSREGHACEALHGDIPQKLREKVIERLKN
GRLNILVATDVVARGLDVERISHVVNFDMPHDNESYVHRIGRTGRAGREGDAILFVTGRE
KRSLFNLERHTRQPIEEMQMPSADEINKIRAERFKTSLRVSVEADEKSLAPFVEMIESLE
EEGIDSSQLAAGLARLLQGDRPLFMEDRPQAARRPEVRESRDRNDRNDRSDRGERAPRAP
RSGRDEVAMETFRVDVGRVHGVKPGHLVGAIANEADLESRFIGQIQIHDDFSTVDLPQGM
TAEVHKVLQNVRVCQRPLNLAKYEGGPMPRRASFRPNDDRKPRSPRRTERLNG
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgacaaattctacacttgtacttgctgaaaatgcccctgcctttactgaattaggtctg
gctcctgaaatcttacaagcactgaccgatgccggttatgtgacgccttctgctattcag
gctgccgccattcctactttgcttgaaggccgtgacgttttaggcttggcacaaactggt
actggtaaaacagctgcgttcgcactgccgctgttgagcaccattaccggtggtaacaac
actcctcaagtattggtattagcacctactcgcgaactggctatccaggttgccgagtcg
tttgaaggctatgccaaataccgcaaagacatccgcattatgtccatctatggtggccaa
gcgtacgacactcaaattcgctcattgaagcgtggtgttgatatcgtggttggtactcca
ggtcgcgtaatggaccacatgcgtcgtggcactctgaaattggataatctgaaagcatta
gtgctggatgaggccgatgagatgttgcgcatgggctttatcgacgacgtagaatggatt
ttggaacaaactccagctactcgccagattgctctgttctcagctactatgccgccggtt
atccagcgcgttgctcagaaatacctgaacaaccctaaagaagtgcgcatcgagaacaaa
acccgtactaactccagcatcaaacagcgttactggtttgtacgtggtatgaacaaacat
gaaggtttgtgccgtttggtagaaaccgaaaaaatggatgccatgctggtattcgtacgt
actcgtaaagacgctgaagatctggccgagatgatgagccgcgaaggtcacgcttgtgaa
gccttgcacggtgatattccgcagaaattgcgtgaaaaagtgattgagcgcctcaagaac
ggtcgcttgaacatcttggtagctaccgacgtagttgctcgtggtctggacgttgagcgt
atcagtcacgtagtaaacttcgatatgcctcacgacaacgaatcatacgtacaccgtatt
ggtcgtaccggtcgtgctggccgcgaaggtgatgcaatcttgtttgttacgggtcgtgaa
aagcgcagcctgttcaaccttgagcgtcatactcgccaaccaatcgaagaaatgcagatg
ccgtctgctgacgagatcaacaagatccgtgccgagcgtttcaaaactagcctgcgtgtt
agtgtagaagccgatgagaaatctctggcaccgttcgtagaaatgattgagtctttagaa
gaagaaggcatcgatagctcacagttagccgctggtttagcgcgcttactgcaaggcgac
cgtccattgtttatggaagaccgcccgcaagccgctcgtcgcccagaagtacgtgaaagc
cgtgaccgcaacgatcgtaatgaccgcagcgaccgtggtgagcgcgctccacgtgcacca
cgctcaggccgtgacgaagtagccatggaaaccttccgcgtagacgtaggtcgtgtacac
ggtgttaagccaggtcacttggtaggtgcgattgctaacgaagcagatcttgagtcacgc
tttattggtcaaatccaaatccacgatgacttctcgactgtagacctgccacaaggcatg
actgcagaagtacacaaagtactgcaaaacgtacgtgtgtgtcagcgtccgttgaacttg
gctaaatacgaaggtggccctatgccacgccgtgcaagctttcgtccaaacgacgaccgc
aagccacgtagcccacgtcgtactgagcgcttaaacggctaa
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