Oceanisphaera profunda: CBP31_04080
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Entry
CBP31_04080 CDS
T04856
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
opf
Oceanisphaera profunda
Pathway
opf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
opf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CBP31_04080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
opf03019
]
CBP31_04080
Enzymes [BR:
opf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CBP31_04080
Messenger RNA biogenesis [BR:
opf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CBP31_04080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
P-loop_SecA
UvrD-helicase
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ART81906
UniProt:
A0A1Y0D3X9
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All DBs
Position
937128..938465
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AA seq
445 aa
AA seq
DB search
MSFASLGLNAQLVQAINECGYTEPTPIQTQAIPLVLAGGDLLAGAQTGTGKTAGFGLPML
QRLSETKAKPLANGRAPVRALVLTPTRELAAQVEENIRAYAKHSDLRTLAMFGGVSINPQ
MKALGGKIDIVVATPGRLLDHVSQRSIDLSRIEMLVLDEADRMLDMGFIRDIQRIIAKMP
AKRQNLLFSATFSNEIKKLAETLLTNPEHIEVATRNATADTIAQRFYGVDKNKKRALLSY
LIGHHNWRQVLVFTRTKHGANRLAMQLDKDGLPAMAIHGDKSQGARTRALSQFKEGKLRV
LVATDIAARGIDISELPHVVNFELPHVAEDYVHRIGRTGRAGVKGEAMSLISFEEKPLLK
AIEKLIKQTAELEIMEGYEPLPDSEQPPIEKPAPNRGRGGASAGRGGQGRGNAGGGRGQG
AGRGNAGNTSKAPRSAKPPRRHDNG
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgcttcccttggcttaaacgcccagcttgtacaagcgatcaatgaatgtggt
tatacagaaccaacccctatccaaacccaagccattccattagtgcttgctgggggcgat
ttgcttgcgggtgcacaaaccggcaccggtaaaaccgcaggttttggtctgccgatgctg
cagcgtttaagcgaaactaaagccaagccactggccaatggccgtgctccagtgcgcgcc
ttggtcctgactccaacccgtgagttggccgcacaggtagaagaaaatattcgtgcctat
gccaagcattcagatttaagaacgttggctatgtttggtggcgtcagcattaatccacaa
atgaaagcgctgggcggcaagattgatatcgttgtcgccactccaggccgtttgctggat
cacgtatcgcagcgctctatcgacttatcacgcattgaaatgctggtattagatgaagca
gaccgcatgttagacatgggctttattcgcgatatacagcgcattatcgccaaaatgccg
gctaagcgtcagaacttattgttctctgctactttttctaacgaaatcaaaaagctggcc
gagacgttgctcactaaccctgagcacattgaagtggctacccgtaacgccaccgccgat
accatcgcccagcgtttttatggcgtagacaagaataaaaagcgcgccctgcttagctac
ctaattggccaccataactggcgccaagtactggtctttacccgtaccaagcacggtgct
aaccgcttagccatgcagctggataaagacggtttgccggccatggccattcatggtgat
aagagccaaggtgcccgtactcgcgcattgagccagtttaaagaaggcaaactgcgggta
ttagtggctaccgatattgctgcacgcggcattgatatcagcgaattgccgcacgtggtt
aactttgagctgccccacgttgccgaagattacgtgcaccgcatcggccgtactggccgt
gccggtgtgaaaggcgaagccatgtctttgatttcatttgaagaaaagccactgttaaaa
gccattgaaaagctaatcaaacaaacagccgagctggaaatcatggaaggctatgagcca
ctgccagacagcgagcagccacccattgaaaaacctgcccctaatcgcggtcgcggtggt
gctagtgccggtcgcggcggtcaaggtcgtggtaacgccggcggcggtcgcggccaaggc
gcaggacggggtaacgctggcaacaccagcaaggctccgcgcagtgccaagccaccccgt
cgtcacgataatggctaa
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