Oceanisphaera profunda: CBP31_07740
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Entry
CBP31_07740 CDS
T04856
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
opf
Oceanisphaera profunda
Pathway
opf03420
Nucleotide excision repair
opf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
opf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CBP31_07740
03430 Mismatch repair
CBP31_07740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
opf03400
]
CBP31_07740
Enzymes [BR:
opf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CBP31_07740
DNA repair and recombination proteins [BR:
opf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CBP31_07740
MMR (mismatch excision repair)
Other MMR factors
CBP31_07740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
AAA_11
AAA_12
AAA_22
DUF3553
Motif
Other DBs
NCBI-ProteinID:
ART82525
UniProt:
A0A1Y0D653
LinkDB
All DBs
Position
1784157..1786325
Genome browser
AA seq
722 aa
AA seq
DB search
MDVSSLLDGMNDEQRAAVAAPAQNMLVLAGAGSGKTRVLVHRIAWLMQVENVPASAILAV
TFTNKASAEMRGRVEQLLGGRLSGLWLGTFHGLAHRLLRAHHLDANLPQDFQILDSDDQL
RLLRRILKGMNLDDKQWAPRQVAGFINARKDEGLRAKDIQILHDPIQQTYQRIYQVYQDT
CDRAGLVDFAELLLRAHELWLYKPHILAHYQDRFRHILVDEFQDTNSIQYAWLQMLAGTQ
ARVMIVGDDDQSIYGWRGAKVENIARFLRDFPGSETVRLEQNYRSTATILKAANTLIANN
TERMGKELWTEGEAGEKISIYGAYNEMDEARFAVGQIQQWQQQDNVLSEVAILYRNNAQS
RVLEEALIQARLPYRIYGGLRFFERQEIKDALSYLRLMNNRGDEAAFERIVNTPTRGIGE
RTLGLIREAARDRQLTMWQAAWALVEEKVLSGRAATAVSRFLALINQLEDDTRELPLHVQ
TDRVIEQSGLKAMYQAERGEKAQARVENLEELVSATRQFLPSEDDDMSLLSAFLSHAALE
AGENQADQFDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQQSAEDSQRLEEERRLAYV
GMTRAMSKLFISHAETRRVYGKEMFHRPSRFIKELPHDCLDEVRLKATVSRAMPNGRFSQ
DRVQDTFNETGFKLGQRVMHPKFGEGVVLNYEGAGDHSRVQVNFEDSGSKWLVTAYARLE
AL
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atggatgtatccagcctgcttgacggcatgaacgacgagcaaagggcggcggtggccgct
cccgcccagaacatgctagtgctggcgggcgccggcagtggtaaaactcgggtgctggtg
catcgcattgcgtggctgatgcaggtcgaaaatgtgccggcctcggcgattttggcggtg
acctttaccaataaagcctccgccgaaatgcgcggccgggttgagcaactgctgggtggc
cgcctttctggcctgtggctgggtaccttccatggtctggctcatagattactgcgcgcc
catcatctggatgccaatctgccgcaagactttcaaattctcgactcagacgatcagctg
cgcttgctgcgccgcattctgaaaggcatgaatctggatgataaacagtgggcaccgcgc
caagtagccggctttattaatgcccgcaaagacgaaggcttaagggccaaagacattcaa
attttgcacgatcccattcagcaaacctatcagcgtatttatcaggtttatcaagacacc
tgtgatcgcgccggcttagtggattttgccgaattgctgctccgcgcccatgagttgtgg
ctgtataagccgcatattttggctcattaccaagaccgctttcgccatattctggtggat
gagtttcaagacaccaacagcattcaatatgcctggctgcaaatgctggccggcacccaa
gcgcgggtaatgatagtgggcgatgacgatcagtctatctatggctggcgcggagctaag
gtagaaaatattgcccgtttcttacgggatttccccggttctgaaaccgtacgcctagag
caaaattaccgctctaccgccaccatcctcaaagccgccaataccctcattgccaataat
accgagcgcatgggcaaagagctgtggaccgagggcgaagccggcgaaaagatttctatc
tacggcgcttataacgaaatggatgaagcgcgctttgcggtgggccaaattcaacaatgg
cagcaacaagataatgtgttgagtgaagtggcaatcttatatcgtaataacgcccagtca
cgagtattagaagaagcgttaattcaggcgcgcctaccttatcgaatttatggcggcctg
cgcttctttgagcgccaagaaattaaagacgcgcttagctatttacgcttaatgaataac
cgcggcgacgaagcggcctttgagcgcatcgtcaacacgcccacccgtggcataggcgag
cgcacccttggcctaatcagagaagccgctcgtgaccgccaactcaccatgtggcaagcg
gcttgggctttggtggaagaaaaggtattgagtggtcgcgctgccacggcggtgagtcgc
ttcttagccttaatcaatcagttagaagacgacacccgcgaattgccactacacgtgcaa
accgaccgcgtcattgagcagtccggcctaaaagccatgtatcaggcggagcgcggcgaa
aaagctcaggcgcgagtcgaaaacttagaagagctggtcagtgccactcgccaattctta
ccctcagaagacgatgatatgtcgctgttgtcggcatttttatcccatgcagcactggag
gcgggcgaaaatcaagcggatcaatttgatgatgcggtgcaactgatgacgctgcactcg
gccaaaggcttggaattcccactggtgtttatggtcggcgtggaagagggcatgttcccc
agccagcagtccgcagaagacagccagcgcctagaagaagagcgccgcttggcctatgta
ggcatgacccgcgccatgagtaagctctttattagccacgcggaaacacgccgcgtatat
ggcaaagaaatgtttcatcgccccagccgttttattaaagagctgccccatgattgttta
gatgaagtgcgccttaaagccacggtgagccgcgccatgcccaatggccgttttagccaa
gaccgagtgcaagatacctttaatgaaaccggttttaagctaggacaaagagtgatgcac
ccgaaatttggcgaaggcgtggtgttaaattacgaaggcgccggcgatcacagccgtgta
caagtgaattttgaagacagcggcagcaaatggctggtgaccgcctatgcgcggttagaa
gcgctgtaa
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