Oceanisphaera profunda: CBP31_07760
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Entry
CBP31_07760 CDS
T04856
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
opf
Oceanisphaera profunda
Pathway
opf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
opf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CBP31_07760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
opf03019
]
CBP31_07760
03400 DNA repair and recombination proteins [BR:
opf03400
]
CBP31_07760
Enzymes [BR:
opf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CBP31_07760
Messenger RNA biogenesis [BR:
opf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CBP31_07760
DNA repair and recombination proteins [BR:
opf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CBP31_07760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
zf-CXXC
T4SS-DNA_transf
Motif
Other DBs
NCBI-ProteinID:
ART82527
UniProt:
A0A1Y0D5P6
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All DBs
Position
1795448..1797274
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AA seq
608 aa
AA seq
DB search
MTPLTEQVDSVPIPDTPLAVLQQVFGYQSFRDGQQEIIDTVIAGRDALVIKPTGGGKSIC
YQIPALLRSGLTIVVSPLISLMKDQVDSLVANGVAAVYINSTLSREVMHNHLTAMRRGEV
KLVYVSPERLLQQEFMERLGELELGLFAIDEAHCISQWGHDFRPEYALLGRLKQWFPHIP
VMALTATADEATRQDMLSRLNLTDPLIHISSFDRPNIRYTLVDKFKGADQLLRYVADQPG
LCGIVYCSSRKRVEEMAERLINRGHKAASYHAGLPLEVRQSVQERFTRDDLDIVVATVAF
GMGIDKPNVRYVVHYDIPKNIESYYQETGRGGRDGLPAEALLLYDPGDVGRVRRLLENNE
NAQQTQVELYKLNVMAAFAESLTCRRQVLLNYFGEYQREACGNCDICLDPPTRYDGSQDA
QKALSCVYRVGQGFGVTYVVDVLRGADTQRVREYGHDKLSTYGIGKDKSQEHWVSVIRQL
IHCGLLSQNITRNMVLQLTEAARPVLRGEVSLELAEPRMVRVKTKDKSDAALTKPEDKAL
FQEMRKLRKQLADEADVPPYVVFSDATLIELARYRPKTEAELLSINGIGARKLERYGVAF
LRLLRQQN
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgactcccttgaccgaacaagttgattccgttcctattcccgacactcccttggcggtt
ttgcagcaggtgtttggctatcagagctttcgtgatggccagcaagagatcatagatacc
gtcatagctgggcgcgatgccttggtgattaagccgactggtggcggtaaatccatctgt
tatcaaattcctgctttgttgcgctccggcctcactattgtggtgtcgccgttgatttcc
ttgatgaaagatcaggtggatagcttagttgccaacggcgtggcggcggtctatatcaac
agcactcttagtcgtgaggtaatgcacaatcacttaacggccatgcgccgcggtgaagtg
aaattggtctatgtatccccagagcgcttactgcagcaagagtttatggagcgactgggc
gaattagagctcggcttatttgccatcgatgaggcgcactgtatttctcagtggggccat
gattttagacccgaatatgcgctactgggccgactcaagcagtggttcccccatattccg
gtgatggcattaacggccaccgcagacgaagccacgcgccaagatatgctgagtcggttg
aatttaaccgaccctttaatccatatctccagcttcgaccgacccaatattcgctacacc
ttagtcgataaatttaaaggcgccgaccagctgctgcgttacgtagctgaccagcccggc
ttatgtggcattgtgtattgctcgagccgcaagcgggttgaggaaatggccgagcgtttg
attaatcggggccataaagctgccagttatcatgcgggtttgccgctagaggtacgccaa
tcggtacaagagcgctttacccgtgacgatctcgatatagtagtggcgaccgtggccttt
ggtatgggcatcgataagccgaacgtgcgctatgtagtgcactatgatatcccaaaaaat
atcgaatcttattatcaagaaaccggtcgtggcggtcgagacggtctgcccgcagaagcc
ttgttgctctacgatccaggcgatgtgggtcgggtacgccgattgttagaaaacaatgaa
aacgcccaacagacccaagtcgagctctataagctgaacgtaatggcggcctttgccgag
tcactgacgtgtcggcgccaagtgctgctaaattactttggtgaatatcagcgggaagct
tgcggtaactgcgatatttgtttggatccgcctacccgttatgacggtagccaagatgcg
caaaaggcgctgtcttgtgtgtatcgagttgggcagggctttggcgtgacgtatgtggtg
gatgtgctgcgcggtgccgatactcagcgggtgcgcgaatacggccacgataagctttcg
acctatggcattggcaaagataaaagccaagagcactgggtgagtgttattcgccaactt
attcactgcggcttactcagccaaaatataacccgcaatatggtgttacagctcacggaa
gcggcgcggccggtattacgcggtgaagtcagcctagagttggccgagccgagaatggta
cgggtaaaaaccaaagataaaagtgatgcggccttaaccaagcctgaagacaaagccttg
tttcaggagatgcgcaagttacgcaagcaattagccgatgaggcagatgtgccgccgtac
gtggtattcagtgacgctacgcttattgaattagcccgctatcgcccgaaaaccgaagcc
gagctattaagtatcaatggcataggcgcgcgtaagttagagcgctacggcgtagcgttt
ttaaggttattacgccagcagaactag
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