KEGG   Oceanisphaera profunda: CBP31_09030
Entry
CBP31_09030       CDS       T04856                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
opf  Oceanisphaera profunda
Pathway
opf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:opf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CBP31_09030
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:opf03021]
    CBP31_09030
   03019 Messenger RNA biogenesis [BR:opf03019]
    CBP31_09030
Transcription machinery [BR:opf03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     CBP31_09030
Messenger RNA biogenesis [BR:opf03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     CBP31_09030
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT AAA_22 OB_RNB AAA_25 S1CSD-TOTE-2 AAA Mor DnaB_C
Other DBs
NCBI-ProteinID: ART82748
UniProt: A0A1Y0D5C5
LinkDB
Position
2069235..2070500
AA seq 421 aa
MNLTELKNTPVSELVKLGETMGLENLARLRKQDIIFAILKAHAKGGADIFGHGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRPPKEGERYFALLKINEVN
YDRPENARNKILFENLTPLHADERMRMERGNGSTEDITARVLDLASPIGKGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPECVLIVLLIDERPEEVTEMQRMVKGEVIASTFDEPAQRHV
QVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGLDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVYPAIDI
TRSGTRREELLTTPDELQKMWILRKIVHPMGESDAVEFLIDKLAMTKTNDEFFDAMKRQQ
K
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgaatctgactgaactcaagaatacccccgtctctgagctagtaaagcttggcgagacc
atgggcttggaaaacctcgcccgcttacgcaagcaagacatcattttcgcaatcctaaag
gcgcatgccaaaggtggcgcggatatcttcggtcatggcgtactggaaatattacaagat
ggctttggctttttgcgcagtgccgactcttcttatttggccggacccgacgatatctat
gtctctcccagtcagatccgtcgtttcaacttgcgcactggcgacaccatagccggtaaa
atacgaccacctaaagaaggtgagcgttatttcgcgctgctaaaaattaacgaagttaac
tacgaccgccccgagaacgcccgcaacaagatcttgtttgaaaacttaacgccattacat
gcggacgaacgcatgagaatggagcgcggcaacggctctaccgaagacattaccgctcgc
gtactcgatttggcctcgcccatcggtaaaggtcagcgtggcctaatagtggcgccgcct
aaagccggtaaaaccatgctgctgcaaaacatcgcacaaagcatcgcttacaatcatcca
gaatgtgtattgatcgtgttattgattgatgagcgtccggaagaagtgaccgagatgcaa
cgcatggtgaaaggcgaagtgattgcttctacctttgatgagccagcacagcgtcacgta
caagtggcggatatggttatcgaaaaagccaagcgcttggttgaacacaagaaagacgtg
gtgattttactcgactccattactcgtctggcgcgcgcttacaacacggtagtgccgtct
tctggcaaggtgttgaccggtggtttggatgctaacgctctgcaccgcccgaagcgtttc
tttggtgcggcgcgtaatgtagaagagggcggcagcctgaccatcattgcgaccgcgtta
gttgataccggctctaagatggatgaagttatctacgaagagtttaaaggtaccggtaac
atggagctgcacttgtcgcgcaaaattgccgagaagcgcgtgtatcctgccatcgacatt
acgcgctcaggcacccgtcgcgaagagttactcaccacgcccgatgagctgcagaagatg
tggatcttgcgcaaaatcgtgcaccccatgggtgagagcgatgcggtcgagttcttgatc
gataagttggccatgaccaaaaccaacgatgaattctttgatgccatgaaacgccagcaa
aaataa

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