Oceanisphaera profunda: CBP31_09540
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Entry
CBP31_09540 CDS
T04856
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
opf
Oceanisphaera profunda
Brite
KEGG Orthology (KO) [BR:
opf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
opf03019
]
CBP31_09540
Messenger RNA biogenesis [BR:
opf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CBP31_09540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAPES4
tRNA-synt_2_TM
Motif
Other DBs
NCBI-ProteinID:
ART82837
UniProt:
A0A1Y0D6L0
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All DBs
Position
2187810..2189798
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AA seq
662 aa
AA seq
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MKFTNQLITTISLCMLTAVVIVLIGAGISFYQVGALYQQRQVDTVLRLVDEGWQPGAKPE
VIDVWLPKILEVGGIIDFTLLRDDIPVYHSTRVDAAATAGDVFTMEYVAPLAAEANLSAR
VVLRPPFYNIDHSLIDLAGILSAIGLVFVGSLLMLRWFRRQLRGLELLDLRGKYILQDQL
NLLVHDTHLEWPHQASQALDKLLLDLNNASKERSRFDSFIRANVFVDKRIGIGNRVFFDN
RLEAALNDSTDHGGALLLVEIQDLEQINYHFGYERGDEILTAAAIYMGHFVRGISGALQA
RYTGTTFALLLPNTVESEAQEAARQVMKLLRRLNWPDEITDPAIYIGGVCFRFGESMLQI
REEAELALRSAELQGGDGYFMYYKGVTEESMGKGTVRWRTLLSRVLAQEKIQLDRQGIYQ
APEQAPVMYELLARIQDEQGRELSARQFFPMAEKCGLLQELDRNIISQALVRLPDTEPGI
MLAVNLSATSLLQRKFYNWLLFELMQHPKSQLNKLVIDLSEAQVSRHFQALVKPLNALKA
LGCQLAVDHAGQDVVSTQYVSDYQLDYLKLHPSLVHDINTKPISQMAVSSLIGNCAGSNT
KVIAMGVETKAEWQCLSQLGVYGGQGYFFAYPESATAKDRSVTQEPAATNRPSARSKLTA
SR
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttacaaaccagcttattactaccattagcttatgtatgttgacagcagtggtt
attgtgttgattggcgccggcatcagtttttatcaggtgggggctttgtatcagcagcgc
caagtcgacactgtgttacgactggttgacgagggctggcagccaggcgccaagcctgaa
gtgattgacgtctggctaccaaaaatactggaagtaggcggtattatcgactttaccctg
ctgcgtgatgatattcctgtctatcattctacccgcgttgatgcggcggccacggccggt
gatgtgtttaccatggaatatgtagcgccgttggcagcggaggcaaacttgtctgcgcgt
gtggtgctgcggccgcctttttataatatcgatcattcacttatcgatcttgcgggtatt
ttaagcgctatcggcttagtgtttgtgggctcgttactgatgttgcgctggtttcgccgc
cagctccgcggcttagaattattagatttacgtggtaaatacatactgcaagatcagcta
aatttattagtgcatgacacgcaccttgagtggcctcatcaagctagccaagcgctcgat
aagttattactggatcttaataatgccagtaaagagcgcagtcgttttgactcttttatt
cgcgccaatgtgtttgttgataaaagaatcggtatcggtaatcgggtattttttgataat
cgtctagaagcggcgcttaatgactctaccgatcatggcggcgcgctcttattagtggaa
attcaagatttagagcaaattaattatcattttggctatgaacgtggcgatgaaatactc
acggctgcggctatttatatgggccattttgtacgcggtatctccggcgccttacaagcg
cgttatacgggcacgaccttcgccttgctattacccaataccgtggaaagtgaggcccaa
gaggcggcgcgccaagtgatgaaattattacgccgtcttaactggccagatgaaattacg
gatccggctatttatattggtggcgtctgttttcgttttggtgagtcgatgttacaaata
cgtgaagaagccgagctggcgctacgcagtgccgagctgcagggcggcgacggctacttt
atgtattacaaaggcgtcaccgaagaaagcatgggcaaaggcacggtacgttggcgcact
ctgctcagccgagtgttagcccaagaaaaaattcagctcgaccgccaaggtatttatcaa
gccccggagcaggcgcctgtgatgtatgaattattggcgcggattcaggatgagcaaggt
cgagagttatcggcgagacagttttttccgatggcggaaaaatgtggactgctccaagag
ttggatcgcaatattatctctcaagcgctagtacgcttacccgataccgagccgggtatt
atgttggcggttaacctgtcggcaaccagcttattacagcgtaagttttataactggctg
ctatttgaattaatgcagcaccctaagtcacaactaaataagctagtgattgatttatct
gaagcacaggtgagtcgccattttcaagccttggtgaaaccgctgaacgccctaaaggca
ttagggtgtcagttggcggtagaccatgcaggccaagatgtagtgagtacccagtatgtg
tctgactatcaattggattatcttaaactgcatcccagcttagtacatgacattaatacc
aagcccattagccaaatggcggttagcagcctcattggtaattgtgcgggcagtaatact
aaggtgatcgccatgggggtagaaaccaaagccgaatggcagtgtttatcccaactgggc
gtttatggcggccaaggctacttttttgcctatcctgagtcggccacagctaaagatagg
agcgttactcaagagccagcagcgactaataggccctcagccaggagcaagctgactgcg
agtagataa
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