Oceanisphaera profunda: CBP31_12800
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Entry
CBP31_12800 CDS
T04856
Name
(GenBank) RNA polymerase sigma factor FliA
KO
K02405
RNA polymerase sigma factor FliA
Organism
opf
Oceanisphaera profunda
Pathway
opf02020
Two-component system
opf02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
opf00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CBP31_12800
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CBP31_12800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
opf03021
]
CBP31_12800
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
opf02035
]
CBP31_12800
Transcription machinery [BR:
opf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CBP31_12800
Bacterial motility proteins [BR:
opf02035
]
Flagellar system
Flagellar assembly proteins
Stator
CBP31_12800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
HTH_23
GerE
Phage_terminase
UPF0122
Motif
Other DBs
NCBI-ProteinID:
ART83391
UniProt:
A0A1Y0D769
LinkDB
All DBs
Position
2894822..2895544
Genome browser
AA seq
240 aa
AA seq
DB search
MSGANKALVYARQQGNQLVERHAGLVRRIAHHLLARLPDSVLLDDLIQSGMVGLLEATRN
FDASKGASFETFAGIRIRGAMLDEIRRGDWVPRSVHKNSREVAAAINTVQRREGRNATDR
EVADELGVSMEVYNAMLLDTSNGKILEMDEFETGIDGKVELSQHVGNPFEDMAKQRFQQA
LSQHIKTLPEREALVLSLYYDEELNLKDIGQILEVSESRVSQIHSQAMHRLRAKLQVWQG
NT seq
723 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggagcgaataaagcgctggtgtacgccagacaacaaggcaaccaattggtggag
cgccatgcgggcttagtgaggcgcattgcgcaccatttattggcgcgtttgccagatagc
gtgctgttggacgatttgatccaatcgggcatggtgggcttattggaagcgacccgtaat
tttgacgccagtaaaggggcgagctttgaaacctttgccggcattcgtattcgcggtgcc
atgctggatgaaattcgccgtggcgactgggtgccccgttcggtacataaaaacagtcgc
gaagtggccgccgccattaataccgtgcagcgccgtgaagggcgcaatgccactgaccgc
gaagtggccgacgagctgggcgtaagcatggaggtgtacaatgccatgttgctcgatacc
agcaatggcaaaatcttagaaatggatgaatttgaaaccggcatcgatggcaaagtagag
ctgagccaacatgtgggcaatccgtttgaagacatggccaaacagcgcttccaacaagcc
ttatcgcaacacattaagaccttgcctgaacgagaagctttggtattgtctttgtattat
gatgaagagcttaatttaaaagacattggtcaaatacttgaggtgagcgagtctcgggtc
agtcaaatacatagtcaagccatgcaccgtttacgggccaaattacaagtttggcaaggc
tag
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