Oceanisphaera profunda: CBP31_13180
Help
Entry
CBP31_13180 CDS
T04856
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
opf
Oceanisphaera profunda
Pathway
opf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
opf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CBP31_13180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
opf03400
]
CBP31_13180
Enzymes [BR:
opf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
CBP31_13180
DNA repair and recombination proteins [BR:
opf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CBP31_13180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
UvrD_C_2
AAA_19
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ART83457
UniProt:
A0A1Y0D8E4
LinkDB
All DBs
Position
complement(2984116..2987973)
Genome browser
AA seq
1285 aa
AA seq
DB search
MSALQTSQVAQPLGEQTSVTQLDPLTFPLFGSRLIEASAGTGKTFTLALLYVRLILGQGN
NQCGFERPLTPKEILVVTFTDLAAGELRDRIRARLVDAADYFKLPELMDDALLATLRQDY
PEPEWPRCAWRLQMAAESMDEASVSTIHSWCNRMLVEHTFDTRGLFNRELVTDSSALLTE
VVEDYWRVHFYRLNSAQAREVLTAFSSPSALESALRNLIKPTSQGISFIGQPLQAESPLL
EANLQEWANYQTAVEHKLAEVRAAWADNWPDIQEHLLALQPGLNKSSFPAAKFPALLVEI
ADWLHNQGSEPTKLCHFAPGALRINKTAAIQQLAPWRAFELVGELNALRHADQQPELPIN
VAILAEATLWVKNEFQKRMQQSAQMGFDDLLVQLEQALDPELAGDHAYALAATLRRNFPI
AMIDEFQDTDPIQFNIFDRIYQVANTADDQGLFMIGDPKQSIYSFRGADIHTYLQVRSAT
AGRHYTLKKNFRSTQGVVDACNAFFTYAEQQPQAAFRYQHSPDTANPIPFIAVEAQGRAQ
QLFLNQASAEQAAVAPMTLWYFADETDNTPLSMGLFRQRAADVAASQISEWLNNAALGQA
GFGEHGVEQVLAPADIAILVRTSSEAALITDALNKLRIPSVFLSDREALLASSEAADLLH
WLRACAEPSDERLVKAALGTCTLGLSISQLAHWQIDELAWEAQMQQFSRWQRIWRRQGVL
VMLQRLMAHYQLPARLLSQPKGERSLTNLLHLGEWLQQTASQIDGEHALIRHLHEHLGKD
DQQLLLRLESDARRVKIITIHKSKGLEFPLVLLPFISGWRNIDGKQKQVPYHRDTGSYTE
VSDNKRFPKAWDEANDERIKEDLRLLYVALTRASHALWLGVAPLGTTKNPQLERSALGHV
LNGGKKFKDADAVWQALSTLAEHPAISLVSAPEAVNVPAPKLAELPLEDARPAPNLGNLS
NWWIASYSALQFGGQKYDNDQKHNLQPNEPTSAQEDQLLELSQTGGGDTALASHSTEQQA
SHDFMHLFPRGPKWGTFLHGLLEWAAVARGSTPDTQALTGFIAAALDDAGRDAMLASRCK
LRNIETLAAPLSTWLKDFILQPWLSTGFALSELTPQHIAVELEFLIEVHSVNAIALDNLV
RPYTVKDAVAPQAKGNFLNGMLKGFIDLVAEKDGRYYVIDWKSNYLGADDASYSQENMQK
AIFEHRYDVQYLLYILALHRQLTARLPDYDYDVHVGGAVYVFLRGWQAPSQGLFHDKPPK
ALIEALDTLFSHSPTLSNTTEGVCL
NT seq
3858 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcactacaaacatcccaggttgcgcagcctctgggagagcaaacatctgtcacc
cagcttgatccgctgacttttcctttgtttggcagtcgcttaattgaagccagtgccggc
accggtaaaacctttaccttggccctgctctatgtgcgactgattttaggccaaggcaat
aatcagtgtggctttgagcgcccactcaccccaaaagaaattttagtggtgacctttacc
gatctggccgccggcgagttgcgcgaccgtattcgcgcccgtttagtggatgccgccgac
tactttaaactgcccgagctgatggatgatgcgctgttagccaccctgcgccaagattac
cctgaacctgaatggccccgttgtgcctggcgtttacaaatggccgccgaaagcatggac
gaagccagtgtgtcgactattcacagctggtgtaatcgcatgttggtggagcacaccttt
gatacccgaggcctgtttaatcgggagctggtcaccgacagcagcgcactgttaactgaa
gtggtggaagactattggcgggtgcatttttaccggctgaacagcgcccaagcccgcgag
gtgcttaccgctttttcctcgcccagtgccctagagtcggcgttgcgtaacttaattaag
cccaccagccaaggcattagctttattggtcagccactgcaggccgagtccccattatta
gaggcaaacctacaggaatgggcgaattatcagaccgcggtggagcacaagctggccgag
gtgcgcgccgcctgggcggataactggccagacattcaagaacacctattggccctgcaa
ccagggctcaataaaagctcctttccggcggccaagttcccggccttattagtagaaata
gccgactggctacataaccaaggctctgagcccactaagttgtgccactttgctccggga
gcgttaaggattaataaaactgccgccattcaacaattggcgccgtggcgtgcctttgag
ctggttggcgagttaaacgcgctgcgccacgccgaccaacaacccgagttgcccattaat
gtggccattttggcggaggcgacactgtgggtgaaaaatgaatttcaaaagcgcatgcag
caaagcgcacaaatgggctttgatgacttattagtgcagcttgaacaggcgctggatcct
gaacttgccggtgatcatgcttatgccttggctgccacattgcgccgtaattttcccatc
gccatgattgatgagtttcaagataccgaccccattcaattcaatatttttgaccgcatt
tatcaggtagccaataccgctgacgatcagggactatttatgatcggcgaccctaaacag
tcgatctatagctttcgcggtgccgatattcatacctacttacaagtacgtagcgctacc
gcaggccgccattacaccttaaagaaaaactttcgctctactcaaggggtggtggacgcc
tgtaatgctttttttacttacgccgaacaacagcctcaggccgcttttcgctatcaacat
agcccagacacagcaaacccgattccctttattgcagtagaagcccaaggccgagcacaa
cagctgtttcttaatcaagcgtcagcagagcaagcggcggtggcacccatgacgctgtgg
tattttgccgatgagactgataatacgcccttgagtatggggctatttcgccaacgcgcc
gccgacgtggcggccagtcagatcagcgaatggttaaataacgccgccctcggccaggcc
ggttttggtgagcacggagtagagcaggtattagcccccgccgacattgccattttggtt
agaaccagcagcgaagccgctctgatcaccgatgccctgaataaactgcgcatacccagc
gtgttcttatcggaccgcgaagccttattagccagctcagaggccgccgacttactgcat
tggctgcgcgcctgtgccgagcccagcgatgagcgattagtcaaagcggccttaggcacc
tgcaccttgggcttatcaattagccaactggcccattggcaaattgatgagctggcgtgg
gaagcgcaaatgcagcaatttagccgttggcagcgcatttggcgccgccaaggagtgttg
gtgatgctgcaacgactgatggcccactatcagctgccggcgcggctattaagccaacct
aaaggcgagcgcagcctgaccaacctcttgcatttgggggaatggttacagcaaaccgcc
agccaaatcgacggcgagcatgcccttattcgccacctccacgagcatttaggtaaagac
gatcagcagctgttattgcgcttagaaagcgatgcgcgccgagttaaaattatcaccatc
cataagtctaaaggcttggaatttccgctggtgctgttgccgtttatcagtggttggcga
aatattgacggcaagcaaaagcaagtgccctatcacagagataccggaagctacaccgaa
gtctccgataataaacgcttcccaaaagcctgggatgaggctaacgacgaacgcattaaa
gaagacttacgcttattgtatgtggcgctcactcgcgccagtcatgcactctggttgggc
gtggcacccttgggcaccactaaaaatccacagctagaaagatcggcgctgggccatgtg
ctcaatggcgggaaaaaatttaaagatgccgatgcggtgtggcaagccttgagcaccttg
gccgagcatccggccatttctttagtgtctgcgcctgaggccgtcaatgtgcccgcaccc
aagctggcagagctacccctcgaagatgcacgccccgcccccaatttaggcaacttaagt
aactggtggattgccagttattcggcgctacaatttggtggtcaaaaatacgataacgat
caaaagcataacctgcagcctaatgagcctaccagcgcccaagaagatcagctgctggag
cttagccaaaccggtggcggtgacaccgcgttagcctcccacagtaccgagcagcaggcc
agccatgattttatgcacctgtttcctcgtggccctaagtggggcaccttcttgcacggc
ttgctggaatgggccgccgtggcccgaggcagcacccccgacacccaagctttaaccggt
tttatcgccgcagcccttgatgatgccggccgagatgccatgctcgccagccgctgtaaa
ctgcgcaatatcgagaccttggcagcccccttaagcacttggctaaaagactttatcctg
caaccttggttgagcaccggctttgcgctaagcgagttaacgccccagcacattgcggta
gaattagagtttttaatagaagtgcatagcgtcaatgccattgcgctggataacttggta
cgcccctataccgtaaaagacgccgtcgccccccaagctaaaggcaactttttaaatggc
atgctcaaaggctttattgacttggtggccgagaaagatggccgctattacgtgattgac
tggaagtcgaactacttaggcgccgatgacgccagttatagccaagaaaacatgcaaaaa
gccatttttgagcaccgctatgacgtgcagtatctgctgtatattttagccttgcatcgc
cagctgactgcgcgcttacccgattatgactacgacgtgcatgtgggcggtgccgtgtat
gtatttttacggggttggcaggcacccagccaaggcttatttcacgataagccgcctaaa
gcattaattgaagcccttgataccttatttagccatagccctacgcttagcaataccacc
gaaggagtctgcctgtga
DBGET
integrated database retrieval system