KEGG   Oceanisphaera profunda: CBP31_13180
Entry
CBP31_13180       CDS       T04856                                 
Name
(GenBank) exodeoxyribonuclease V subunit beta
  KO
K03582  exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
Organism
opf  Oceanisphaera profunda
Pathway
opf03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:opf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    CBP31_13180
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:opf03400]
    CBP31_13180
Enzymes [BR:opf01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     CBP31_13180
DNA repair and recombination proteins [BR:opf03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     CBP31_13180
SSDB
Motif
Pfam: UvrD-helicase UvrD_C PDDEXK_1 UvrD_C_2 AAA_19 AAA_25
Other DBs
NCBI-ProteinID: ART83457
UniProt: A0A1Y0D8E4
LinkDB
Position
complement(2984116..2987973)
AA seq 1285 aa
MSALQTSQVAQPLGEQTSVTQLDPLTFPLFGSRLIEASAGTGKTFTLALLYVRLILGQGN
NQCGFERPLTPKEILVVTFTDLAAGELRDRIRARLVDAADYFKLPELMDDALLATLRQDY
PEPEWPRCAWRLQMAAESMDEASVSTIHSWCNRMLVEHTFDTRGLFNRELVTDSSALLTE
VVEDYWRVHFYRLNSAQAREVLTAFSSPSALESALRNLIKPTSQGISFIGQPLQAESPLL
EANLQEWANYQTAVEHKLAEVRAAWADNWPDIQEHLLALQPGLNKSSFPAAKFPALLVEI
ADWLHNQGSEPTKLCHFAPGALRINKTAAIQQLAPWRAFELVGELNALRHADQQPELPIN
VAILAEATLWVKNEFQKRMQQSAQMGFDDLLVQLEQALDPELAGDHAYALAATLRRNFPI
AMIDEFQDTDPIQFNIFDRIYQVANTADDQGLFMIGDPKQSIYSFRGADIHTYLQVRSAT
AGRHYTLKKNFRSTQGVVDACNAFFTYAEQQPQAAFRYQHSPDTANPIPFIAVEAQGRAQ
QLFLNQASAEQAAVAPMTLWYFADETDNTPLSMGLFRQRAADVAASQISEWLNNAALGQA
GFGEHGVEQVLAPADIAILVRTSSEAALITDALNKLRIPSVFLSDREALLASSEAADLLH
WLRACAEPSDERLVKAALGTCTLGLSISQLAHWQIDELAWEAQMQQFSRWQRIWRRQGVL
VMLQRLMAHYQLPARLLSQPKGERSLTNLLHLGEWLQQTASQIDGEHALIRHLHEHLGKD
DQQLLLRLESDARRVKIITIHKSKGLEFPLVLLPFISGWRNIDGKQKQVPYHRDTGSYTE
VSDNKRFPKAWDEANDERIKEDLRLLYVALTRASHALWLGVAPLGTTKNPQLERSALGHV
LNGGKKFKDADAVWQALSTLAEHPAISLVSAPEAVNVPAPKLAELPLEDARPAPNLGNLS
NWWIASYSALQFGGQKYDNDQKHNLQPNEPTSAQEDQLLELSQTGGGDTALASHSTEQQA
SHDFMHLFPRGPKWGTFLHGLLEWAAVARGSTPDTQALTGFIAAALDDAGRDAMLASRCK
LRNIETLAAPLSTWLKDFILQPWLSTGFALSELTPQHIAVELEFLIEVHSVNAIALDNLV
RPYTVKDAVAPQAKGNFLNGMLKGFIDLVAEKDGRYYVIDWKSNYLGADDASYSQENMQK
AIFEHRYDVQYLLYILALHRQLTARLPDYDYDVHVGGAVYVFLRGWQAPSQGLFHDKPPK
ALIEALDTLFSHSPTLSNTTEGVCL
NT seq 3858 nt   +upstreamnt  +downstreamnt
atgagtgcactacaaacatcccaggttgcgcagcctctgggagagcaaacatctgtcacc
cagcttgatccgctgacttttcctttgtttggcagtcgcttaattgaagccagtgccggc
accggtaaaacctttaccttggccctgctctatgtgcgactgattttaggccaaggcaat
aatcagtgtggctttgagcgcccactcaccccaaaagaaattttagtggtgacctttacc
gatctggccgccggcgagttgcgcgaccgtattcgcgcccgtttagtggatgccgccgac
tactttaaactgcccgagctgatggatgatgcgctgttagccaccctgcgccaagattac
cctgaacctgaatggccccgttgtgcctggcgtttacaaatggccgccgaaagcatggac
gaagccagtgtgtcgactattcacagctggtgtaatcgcatgttggtggagcacaccttt
gatacccgaggcctgtttaatcgggagctggtcaccgacagcagcgcactgttaactgaa
gtggtggaagactattggcgggtgcatttttaccggctgaacagcgcccaagcccgcgag
gtgcttaccgctttttcctcgcccagtgccctagagtcggcgttgcgtaacttaattaag
cccaccagccaaggcattagctttattggtcagccactgcaggccgagtccccattatta
gaggcaaacctacaggaatgggcgaattatcagaccgcggtggagcacaagctggccgag
gtgcgcgccgcctgggcggataactggccagacattcaagaacacctattggccctgcaa
ccagggctcaataaaagctcctttccggcggccaagttcccggccttattagtagaaata
gccgactggctacataaccaaggctctgagcccactaagttgtgccactttgctccggga
gcgttaaggattaataaaactgccgccattcaacaattggcgccgtggcgtgcctttgag
ctggttggcgagttaaacgcgctgcgccacgccgaccaacaacccgagttgcccattaat
gtggccattttggcggaggcgacactgtgggtgaaaaatgaatttcaaaagcgcatgcag
caaagcgcacaaatgggctttgatgacttattagtgcagcttgaacaggcgctggatcct
gaacttgccggtgatcatgcttatgccttggctgccacattgcgccgtaattttcccatc
gccatgattgatgagtttcaagataccgaccccattcaattcaatatttttgaccgcatt
tatcaggtagccaataccgctgacgatcagggactatttatgatcggcgaccctaaacag
tcgatctatagctttcgcggtgccgatattcatacctacttacaagtacgtagcgctacc
gcaggccgccattacaccttaaagaaaaactttcgctctactcaaggggtggtggacgcc
tgtaatgctttttttacttacgccgaacaacagcctcaggccgcttttcgctatcaacat
agcccagacacagcaaacccgattccctttattgcagtagaagcccaaggccgagcacaa
cagctgtttcttaatcaagcgtcagcagagcaagcggcggtggcacccatgacgctgtgg
tattttgccgatgagactgataatacgcccttgagtatggggctatttcgccaacgcgcc
gccgacgtggcggccagtcagatcagcgaatggttaaataacgccgccctcggccaggcc
ggttttggtgagcacggagtagagcaggtattagcccccgccgacattgccattttggtt
agaaccagcagcgaagccgctctgatcaccgatgccctgaataaactgcgcatacccagc
gtgttcttatcggaccgcgaagccttattagccagctcagaggccgccgacttactgcat
tggctgcgcgcctgtgccgagcccagcgatgagcgattagtcaaagcggccttaggcacc
tgcaccttgggcttatcaattagccaactggcccattggcaaattgatgagctggcgtgg
gaagcgcaaatgcagcaatttagccgttggcagcgcatttggcgccgccaaggagtgttg
gtgatgctgcaacgactgatggcccactatcagctgccggcgcggctattaagccaacct
aaaggcgagcgcagcctgaccaacctcttgcatttgggggaatggttacagcaaaccgcc
agccaaatcgacggcgagcatgcccttattcgccacctccacgagcatttaggtaaagac
gatcagcagctgttattgcgcttagaaagcgatgcgcgccgagttaaaattatcaccatc
cataagtctaaaggcttggaatttccgctggtgctgttgccgtttatcagtggttggcga
aatattgacggcaagcaaaagcaagtgccctatcacagagataccggaagctacaccgaa
gtctccgataataaacgcttcccaaaagcctgggatgaggctaacgacgaacgcattaaa
gaagacttacgcttattgtatgtggcgctcactcgcgccagtcatgcactctggttgggc
gtggcacccttgggcaccactaaaaatccacagctagaaagatcggcgctgggccatgtg
ctcaatggcgggaaaaaatttaaagatgccgatgcggtgtggcaagccttgagcaccttg
gccgagcatccggccatttctttagtgtctgcgcctgaggccgtcaatgtgcccgcaccc
aagctggcagagctacccctcgaagatgcacgccccgcccccaatttaggcaacttaagt
aactggtggattgccagttattcggcgctacaatttggtggtcaaaaatacgataacgat
caaaagcataacctgcagcctaatgagcctaccagcgcccaagaagatcagctgctggag
cttagccaaaccggtggcggtgacaccgcgttagcctcccacagtaccgagcagcaggcc
agccatgattttatgcacctgtttcctcgtggccctaagtggggcaccttcttgcacggc
ttgctggaatgggccgccgtggcccgaggcagcacccccgacacccaagctttaaccggt
tttatcgccgcagcccttgatgatgccggccgagatgccatgctcgccagccgctgtaaa
ctgcgcaatatcgagaccttggcagcccccttaagcacttggctaaaagactttatcctg
caaccttggttgagcaccggctttgcgctaagcgagttaacgccccagcacattgcggta
gaattagagtttttaatagaagtgcatagcgtcaatgccattgcgctggataacttggta
cgcccctataccgtaaaagacgccgtcgccccccaagctaaaggcaactttttaaatggc
atgctcaaaggctttattgacttggtggccgagaaagatggccgctattacgtgattgac
tggaagtcgaactacttaggcgccgatgacgccagttatagccaagaaaacatgcaaaaa
gccatttttgagcaccgctatgacgtgcagtatctgctgtatattttagccttgcatcgc
cagctgactgcgcgcttacccgattatgactacgacgtgcatgtgggcggtgccgtgtat
gtatttttacggggttggcaggcacccagccaaggcttatttcacgataagccgcctaaa
gcattaattgaagcccttgataccttatttagccatagccctacgcttagcaataccacc
gaaggagtctgcctgtga

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