Oculina patagonica: 144629052
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Entry
144629052 CDS
T11970
Symbol
LOC144629052
Name
(RefSeq) superkiller complex protein 2-like
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
opg Oculina patagonica
Pathway
opg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
opg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
144629052 (LOC144629052)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
opg03019
]
144629052 (LOC144629052)
Enzymes [BR:
opg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
144629052 (LOC144629052)
Messenger RNA biogenesis [BR:
opg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
144629052 (LOC144629052)
mRNA degradation factors
3'-5' decay
Ski complex
144629052 (LOC144629052)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
DUF3516
Motif
Other DBs
NCBI-GeneID:
144629052
NCBI-ProteinID:
XP_078343350
LinkDB
All DBs
Position
1:38078424..38100070
Genome browser
AA seq
1290 aa
AA seq
DB search
MEEKDTKQGSDALEYAFDLLEVGCTGTIEVIPESINKSSKKELKPLTTLPCGLPPLFAPD
LKSDLEKYLLDPTSLPIHDFHKTQRFWPRERDPESLLFSDVCPVPSTLKVERNPTTGELL
GYNEVMLTDTGCTAKNSMSLLRQPGPLSASVRGESTNYPFLPGGMEAPETTKPDIVFDGE
LNFEKDLLSVPPGFKHGASFSDAKQEQEGETLASVPQVLAMSDIMAGTTLEDLEYSDDGD
ELESDEEDIDKLPEKGESVIDPEDTTEGSLQRQDSLENVLVEGQDSGNKMTSAAPITEKP
VKEEWAIMVDVTEPAKDFHKQVPDMAHKWKFELDTFQKQAVLCLENNESVFVAAHTSAGK
TVVAEYAIALANKHMTRTVYTSPIKALSNQKFREFKDTFEDVGLLTGDVQIRPEASCLIM
TTEILRSMLYNGSDAIRDVEWVIFDEVHYINDDERGVVWEEVLIMLPAQVKIILLSATVP
NTLEFADWIGRTKKKKIYVISTPKRPVPLQHFLYTGNSNKTSNELFMLVDANSKFLTRGY
EAAVAAKKEREGKGKDAYGSKTHQTTSIREDKNIWLSLIEMLRKKEKLPVVAFTFSRKRC
DDNADQLGNLDLTTSTEKSLIHVFIQKSVARLKGPDRQLPQVSRIQELLKRGLGVHHSGV
LPIIKEMVEMLFGRGLVKILFATETFAMGVNMPARTVVFDSIRKHDGTNFRDLLSGEYIQ
MAGRAGRRGLDPTGTVILLCKGNVPLMADLHKMMLGKPTQLVSRFRLTYSMILNLLRVEE
LRVEDMMKRSFAEFHMQKDAQERKREMEELEKKLQNVKDVDCTFCAEDLKQYFKDCRELS
ELTRTVQAAILSSPHGQRALSPGRVVTINTAEHKNALAVILQAENVSTQVYSTVQSQLVS
SPNERKFDVLVICDAEEHNSVNNDLKTTKGTPVGASKVDDEVQPVVKRRLFLPEGRCSHR
ILKVNGSQISAITVRQMKVDTSKIIDDHKKRMLPRFRNDLPGKTTISAEQELLRLSEANP
EGLGTMDPVKDFNIRDLDMVTTIARKQSLEERMASYACLNCPKFTEHFKSVANQMKLREH
VTTLRFLLSDESLQHREELQQRIEVLRKLRYVDANNAVQLKGRVACEISNHELIITELVF
ENAFTNLHPTEIVALLSCFVFQQRRCSEPSLTKTLEEGKECILNMSEQIANLQSECGLST
SVQEFKEQYHFGLVEAVFEWARGMPFSEITNLTDVQEGIIVRCIQRLDETCRDVRNAARI
IGDPKLGEKMEEASAMIKRDIVFAASLYTQ
NT seq
3873 nt
NT seq
+upstream
nt +downstream
nt
atggaagagaaagacacaaaacagggatctgatgccttggaatatgcttttgacctcctg
gaagtcggatgcacagggacaattgaagttattccagaatcaattaataaatcctccaag
aaggaactaaaaccattgacaacactcccttgtggtttacctcctctgtttgcaccagac
ttgaaatctgacttggagaagtatcttttggatcccacctccctgcccattcatgacttc
cacaaaacacaaaggttttggccccgtgaaagagacccagagagtttgttgttttcagat
gtctgtcctgttccttcaacattgaaagtggagagaaatccaacaactggagagcttctg
ggctataatgaggtgatgttaacagatactggttgcactgctaaaaattccatgtcccta
ttgcgacaacctggaccactatctgcctctgtaagaggagagtccactaattatcctttt
ttaccaggtggtatggaggctccagaaactacaaaacctgacattgtgtttgatggagag
ctgaactttgagaaagatcttctctctgtcccaccaggctttaaacatggagcttcattt
agtgatgcaaaacaagaacaagagggagaaacccttgcttctgtgcctcaagtcttggcg
atgtccgacatcatggctggcacaacactggaagatcttgagtacagtgatgatggtgat
gagctggagtctgatgaagaggatatagacaagttgcctgaaaagggggaatctgttatt
gacccagaggacaccacagaggggagtctccagagacaagatagccttgaaaatgttttg
gtggagggacaagattcagggaacaaaatgacatcagcagctcctattacagagaaacca
gtcaaagaggagtgggcgataatggtggacgtgacagaacctgcgaaggactttcacaaa
caagttcctgatatggcacataagtggaagtttgagctggatacgtttcaaaagcaggcc
gtgctgtgtttggagaacaacgagagcgtttttgtcgcggctcacacatctgctggaaag
actgttgtggctgagtatgccattgccctggccaataaacacatgacaaggactgtgtat
acctcaccaatcaaagctttgtccaatcagaagttccgtgagttcaaggatacttttgag
gatgttggtttattgacaggtgacgtgcagatccgacccgaggcttcctgtctgatcatg
accacagaaattttacgttccatgttgtacaacggttcagatgccatccgagacgtggag
tgggtaatttttgatgaagttcactacattaacgatgatgagagaggcgttgtgtgggaa
gaggttctgattatgttaccagctcaagtcaagatcatattgttatcagccacagtaccc
aacacgctggaatttgccgactggataggacgtaccaagaagaaaaagatttacgtcatc
agcactccgaagcgcccagtccccctacagcacttcctgtacacgggcaacagtaataag
acgagcaatgagctgtttatgctcgtggatgccaacagtaaattcctgacgcgcggttac
gaagcagctgtggcggcaaagaaagagagagaagggaaaggaaaggatgcgtacggctcc
aagactcaccaaactacaagtatcagagaggacaagaatatctggttatctttgattgaa
atgcttcgcaaaaaggaaaaacttcctgtggtcgcttttaccttttcacggaagagatgt
gacgacaatgcagatcagctgggcaaccttgatctcaccacctcaactgagaagagtttg
atccatgtttttattcagaaatccgtggcgagactcaaaggccccgacagacagttgcca
caagtttccaggatacaagagcttctaaagcgcggtcttggtgtacaccacagtggagtg
ttaccgattataaaagagatggtggaaatgctgtttggacgagggctggtgaagattctc
tttgccactgaaacgtttgctatgggggttaacatgccagcgaggacagtagtctttgat
tccattaggaaacatgatggtacaaactttagagatctgttgtctggtgaatatattcag
atggctggccgtgcaggccggagaggtttggaccctaccggaactgttatcctgttatgc
aaaggaaacgtacctcttatggcggacctacacaaaatgatgctgggaaaaccaacacag
ctggtctctaggttccgtctcacgtattctatgatattgaatttgttacgggtggaagaa
ctgcgtgtggaggacatgatgaaaagaagcttcgccgagttccacatgcagaaagatgca
caggaaagaaaacgagaaatggaagaactggagaaaaaattacaaaatgtaaaagacgtg
gactgtacgttttgtgcggaagatctaaagcagtattttaaggattgtcgagagctgtcg
gaattaacaagaaccgttcaggcagccatcctttcgtctccccacggtcagcgggctctc
tctccaggacgtgttgtcactattaataccgctgaacacaaaaacgctttagctgtaata
ttgcaagcagaaaacgtctcgacccaggtctactcgaccgtgcagtctcaattagtgtcc
agtccaaatgaaaggaagtttgatgtcctggtgatttgtgacgcagaagaacacaactca
gtgaacaacgatttaaaaacgacaaaaggaactccagtaggagcatcgaaggtggatgat
gaggtgcagcctgttgtaaaacgaaggttgtttttacctgaaggacgatgctctcacagg
attctgaaggtgaatggaagtcaaatcagtgctattactgtccgtcaaatgaaagtggat
acgagcaagattattgacgatcataaaaagagaatgctgccaagatttaggaatgacttg
ccagggaaaacaaccataagtgcggaacaagaacttcttaggctgtccgaggccaatccc
gagggactgggaactatggatcctgttaaagactttaacatccgagacttagatatggtg
acgacgatagcgcgaaaacaaagcctagaagaacgaatggcgagctacgcgtgtttgaac
tgccccaagtttacagagcactttaaatctgtcgccaaccagatgaagttacgcgagcac
gtgactactctgagattcctcttgtcagacgaaagtcttcaacatagggaagagctgcag
caaagaatagaggttttgagaaaattgcgttacgtggacgccaataacgcagtacaactg
aaaggaagagtggcatgtgagattagtaaccacgagttgatcattacagaactcgtcttt
gaaaatgctttcaccaatcttcatcctacggagattgtcgctttactgtcatgcttcgtt
ttccagcagcgtcgatgcagtgagccgagcttaaccaagacgctggaagagggcaaggag
tgcatattaaacatgtcggaacaaatcgctaatcttcagtccgagtgtggtctcagtacc
tcagtacaagagttcaaggaacaataccactttggtcttgtggaagctgtgtttgaatgg
gcaagaggaatgcctttctctgaaataaccaacttgacagatgtccaggaagggattatt
gttcgatgtattcaacgtttggacgagacatgtcgtgacgtcagaaatgccgctcggatt
atcggggatccaaagcttggagagaagatggaggaagcttcagcaatgataaaaagagac
attgtctttgcagcaagtctctacacgcagtaa
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