Oculina patagonica: 144639203
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Entry
144639203 CDS
T11970
Symbol
LOC144639203
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
opg Oculina patagonica
Pathway
opg03018
RNA degradation
opg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
opg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
144639203 (LOC144639203)
09123 Folding, sorting and degradation
03018 RNA degradation
144639203 (LOC144639203)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
opg03019
]
144639203 (LOC144639203)
03041 Spliceosome [BR:
opg03041
]
144639203 (LOC144639203)
Messenger RNA biogenesis [BR:
opg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
144639203 (LOC144639203)
mRNA degradation factors
5'-3' decay
Lsm complex
144639203 (LOC144639203)
Spliceosome [BR:
opg03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
144639203 (LOC144639203)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
144639203
NCBI-ProteinID:
XP_078354605
LinkDB
All DBs
Position
14:8675049..8678647
Genome browser
AA seq
145 aa
AA seq
DB search
MVLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDRFWKIPEC
YVRGSNIKYLRIPDEVIDMVKDEMVKQGKSRGTGRPGRGGRGGGGGRGGYSGGGGGGGRG
GSFGGRGGGRGGGGQKRNRDDSAGK
NT seq
438 nt
NT seq
+upstream
nt +downstream
nt
atggtgcttcctctctcgcttttacggacggcgcaaaaccatcctatgctggtagagcta
aaaaatggagagacttacaatggacatcttgtaagctgcgacaactggatgaacataaat
cttagagaggtcatctgcacttccagggatggtgacagattttggaagataccagagtgt
tacgtcagaggcagcaacataaaatatcttaggattccagatgaggttattgacatggtg
aaggatgaaatggtcaaacaaggaaagagcagaggtacagggagaccagggcgtggtggc
cgtggaggtggtggaggtcgtggaggctacagtggaggtggtggcggagggggaagaggg
gggtcatttggtgggcgtggtggtggaagagggggaggggggcaaaagagaaacagggac
gacagtgctggaaagtaa
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