Oculina patagonica: 144642467
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Entry
144642467 CDS
T11970
Symbol
LOC144642467
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
opg Oculina patagonica
Pathway
opg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
opg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
144642467 (LOC144642467)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
opg03041
]
144642467 (LOC144642467)
03009 Ribosome biogenesis [BR:
opg03009
]
144642467 (LOC144642467)
Enzymes [BR:
opg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
144642467 (LOC144642467)
Spliceosome [BR:
opg03041
]
Complex A
U2 snRNP components
U2 related factors
144642467 (LOC144642467)
Complex B
144642467 (LOC144642467)
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
144642467 (LOC144642467)
Ribosome biogenesis [BR:
opg03009
]
Eukaryotic type
90S particles
Helicases
144642467 (LOC144642467)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
WHD_HA2
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
Flavi_DEAD
ResIII
SRP54
nSTAND_NTPase5
AAA_7
Cas3-like_C_2
AAA_29
TrwB_AAD_bind
Motif
Other DBs
NCBI-GeneID:
144642467
NCBI-ProteinID:
XP_078357553
LinkDB
All DBs
Position
2:763817..776936
Genome browser
AA seq
709 aa
AA seq
DB search
MSKRRLDVDGNSSNSLSTAKRIREELSNPSNLRGKINPFNGKLFTDKYFDILKKRIELPV
WEYREKFMEGMKEHKAFVLVGETGSGKTTQIPQWCLETRMDKRKAVACTQPRRVAAMSVA
QRVADELDVMIGQEVGYTIRFEDCTSPRTCLKYMTDGMLLREAMTDPLLDRYAVILLDEA
HERTLATDILMGLLKEVVRQRHDLKIIIMSATLDAGKFQDYFDNAPLMTIPGRTHPVEIF
YTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRLKKEIENLGPEVGE
LRCIPLYSTLPPQQQQKIFDPAPAKRPNGAIGRKCVVSTNIAETSLTIDGVVFVIDPGFS
KQKVYNPRIRVESLLVSAISKASSQQRAGRAGRTRPGKCFRLYTEKAYQTEMQDNTYPEI
LRSNLGTVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLGALDDNGDLTQLGSMM
AEFPLDPQLAKMVIASCDHNCSNEILSITAMLSVPQVFLRPNEAKKAADEAKMKFAHIDG
DHLTLLNVYHAYKQNHEDIQWCYDNFIQNRSLKSADNVRQQLTRIMDRFNLARRSTDFNS
RDYYVNIRKALVAGFFMQVAHLERSGHYLTVKDNQVVQLHPSTCLDHKPEWVLYNEFVLT
TKNYIRTCSDIKADWLVKVAPQYYDMRNFPMCEAKRVLERIIERLQKNR
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaagaagattggatgtcgatgggaactcatccaattcgttaagcaccgcgaaa
aggattcgggaagagttgagcaacccaagtaatctgcgtgggaagatcaatcctttcaat
ggcaagctatttacagacaaatattttgacattcttaagaagagaattgagctgccagta
tgggaatacagagaaaagtttatggaaggcatgaaagaacacaaagcatttgttcttgtt
ggagagacagggtctggaaaaacaacccagattcctcagtggtgtcttgaaactcgcatg
gacaagcgcaaggctgttgcctgtacacagcccaggagagtagctgccatgagtgtcgca
cagcgtgtcgctgatgaattagacgtgatgattggtcaggaagtcgggtacactattcga
tttgaagactgcacaagccctagaacatgcctgaagtacatgacagatggtatgttgtta
cgtgaggccatgacagatcccttgctggaccggtatgcagttattttgcttgatgaagcc
cacgagagaactcttgccaccgatatcctcatgggtctactgaaagaggttgtgcgtcaa
agacatgacctgaagatcattatcatgagcgccactttggatgctggaaaatttcaagat
tactttgacaatgctccactcatgacaatacctggacggacacaccctgttgagatattc
tacacccctgaacctgagcgagactacctggaggcagccattagaactgtggtacagatc
catatgtgtgaggaagtggagggtgacgttttgctctttctcactggacaagaggaaatt
gaagaagcttgtaaaagattaaagaaagaaattgagaacttgggtcctgaagtaggagag
ttgcgctgtattcctctctactccactctacctcctcaacagcaacaaaaaatttttgat
cctgccccagctaagcgacccaatggtgccattggccgcaagtgtgtagtgtcgactaac
atagctgagacatccctcacaattgatggtgttgtgtttgttattgatcctggcttttca
aaacagaaggtgtataaccctcgtatccgtgtagagtccctgttagtgtctgccatctca
aaggccagttcacagcagagggccggtcgtgctggtcgtacccgtcctggcaagtgcttt
agactctatacagagaaggcttatcaaactgaaatgcaagacaacacatatcctgagatc
cttaggtccaatcttggtactgtggtactgcagctgaagaagttgggcatcgatgacttg
gtgcattttgattttatggatcctcccgcacctgagactttgatgagagctcttgagttg
ctgaattatcttggtgctcttgacgacaatggagatctaacacaacttggttctatgatg
gcagagtttcctctcgacccacagcttgccaagatggtgatcgcaagctgtgatcataac
tgttctaacgagattttatccatcaccgccatgttgtcagttcctcaagtgttcctgagg
ccgaatgaagccaagaaggctgctgatgaagctaagatgaagtttgctcacattgatggc
gaccatctcaccttgctgaatgtctaccatgcatacaaacaaaatcatgaagatatccag
tggtgttatgacaacttcatccaaaatcgatcactcaagtcagctgacaatgtaaggcag
caactcaccagaatcatggacagattcaaccttgcacgacgcagcactgactttaacagt
cgggattattacgtgaatatcaggaaggcacttgtggctggattctttatgcaggtggct
catttggagaggtctggacactacctgacagtcaaggacaatcaggttgtacaactgcat
ccatccacgtgcttggaccacaagcctgagtgggtgctgtacaatgagtttgtcctgacg
accaagaactacattcgaacatgtagtgacatcaaggctgactggctggtgaaggttgcc
cctcagtactatgatatgagaaacttccccatgtgcgaggccaagcgtgtactggagagg
atcatcgaaagattacagaagaacagatag
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integrated database retrieval system
