Oculina patagonica: 144665136
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Entry
144665136 CDS
T11970
Symbol
LOC144665136
Name
(RefSeq) spliceosome RNA helicase Ddx39b
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
opg Oculina patagonica
Pathway
opg03013
Nucleocytoplasmic transport
opg03015
mRNA surveillance pathway
opg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
opg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
144665136 (LOC144665136)
09122 Translation
03013 Nucleocytoplasmic transport
144665136 (LOC144665136)
03015 mRNA surveillance pathway
144665136 (LOC144665136)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
opg03019
]
144665136 (LOC144665136)
03041 Spliceosome [BR:
opg03041
]
144665136 (LOC144665136)
Enzymes [BR:
opg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
144665136 (LOC144665136)
Messenger RNA biogenesis [BR:
opg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
144665136 (LOC144665136)
Spliceosome [BR:
opg03041
]
Complex C
Other components
EJC/TREX
144665136 (LOC144665136)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
144665136 (LOC144665136)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Thioredoxin_6
Utp25_C
AAA_19
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
144665136
NCBI-ProteinID:
XP_078382437
LinkDB
All DBs
Position
1:complement(32920393..32927189)
Genome browser
AA seq
428 aa
AA seq
DB search
MAEVGDENELLDYEEEETETPAEAQATKDLAKKDVKGTYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDIICQAKSGMGKTAVFVLATLQQLEQIDGQVSVLVMC
HTRELAFQISKEYERFSKYMNNIKVSVFFGGISIKKDQQTLKTNCPHIVVGTPGRILALA
REKTLNLKHIKHFILDECDKMLEQLDMRRDVQEVFRMTPHEKQVMMFSATLAKEIRPVCK
KFMQDPMEVYVDDETKLTLHGLQQYYVKLKDQEKNRKLFDLLDVLEFNQVIIFVKSVQRC
VALSQLLVEQNFPAISIHRGMEQEERLSRYKQFKDFSKRMLVATNLFGRGMDIERVNIVF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEKDAKILNEVQDRFEVNVGELPEEIDL
STYIEQGR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggccgaagtcggtgacgaaaatgaattgttggactacgaagaggaggagacagaaact
ccagctgaagctcaggcaaccaaagatctcgcaaagaaagatgtgaagggaacgtacgtc
agtatccacagttctggcttcagagattttcttttgaagccggagcttttacgagccatc
gttgactgtggattcgaacatccttcggaagttcagcacgagtgcatccctcaggcgatc
cttggcatggacatcatctgccaggccaaaagtggaatgggcaagacagccgtgtttgtc
ctggccacccttcagcagctggagcaaattgacggccaagtcagtgtgttggtcatgtgc
cacacgcgagagttggccttccagatctctaaagagtatgaaaggttttctaaatacatg
aataacatcaaagtttcagtgttttttggcggcatcagtatcaagaaggatcagcagacc
ctgaagaccaactgcccacatatcgtagtaggtacaccaggcagaatattggcgctggca
cgtgagaagacgctaaatctcaagcatatcaagcacttcatccttgacgagtgtgacaag
atgttagaacaacttgatatgcgaagagatgtccaagaagtattccgcatgacaccacac
gagaagcaagtcatgatgttcagtgccacactagccaaagagatccgacccgtctgcaag
aaatttatgcaagatcccatggaagtgtatgttgatgatgagacaaagttgacattgcac
ggtctgcagcaatactacgtcaaactcaaagaccaggagaagaataggaaactatttgac
cttttagatgtgttagagttcaaccaggtaatcatcttcgtgaagtcagtacagcgctgc
gttgctctttcccagttgctggtagaacagaactttccagcaatttccatccatagagga
atggaacaggaggaaagattgtcacgctacaaacagttcaaagatttttcgaaaaggatg
ctggtagccaccaacttatttggtcgtggaatggacatcgaaagagtcaacattgttttc
aattatgacatgccagaggattccgacacttaccttcacagggttgccagagctggacgt
tttggcacaaaaggtcttgccatcaccttcgtttcagatgaaaaagatgccaaaatatta
aatgaagtccaagatcgatttgaagtaaatgtaggagaactccctgaggagattgacctt
tcaacatacattgaacaaggtcgctga
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