Oceanithermus profundus: Ocepr_0322
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Entry
Ocepr_0322 CDS
T01369
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
opr
Oceanithermus profundus
Pathway
opr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
opr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ocepr_0322
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
opr03019
]
Ocepr_0322
03009 Ribosome biogenesis [BR:
opr03009
]
Ocepr_0322
Enzymes [BR:
opr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Ocepr_0322
Messenger RNA biogenesis [BR:
opr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Ocepr_0322
Ribosome biogenesis [BR:
opr03009
]
Prokaryotic type
rRNA helicases
Ocepr_0322
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Hera_RBD
Hera_DD
ResIII
GUCT
SNF2-rel_dom
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ADR35782
UniProt:
E4U6P4
LinkDB
All DBs
Position
308050..309636
Genome browser
AA seq
528 aa
AA seq
DB search
MGGAPERNSMFRELGLSEQALAALEEKGIATPTPIQNEALPAALAGGDVLGLARTGTGKT
LAFALPIAERLEPSRTPGRPPRALVLAPTRELALQVAGELEWVAPHLRIVTVYGGTGYGS
QAAALKRGADVVVATPGRAIDYLNRGVLDLAQVRIAVLDEADEMLSMGFEEAVETLLGAT
PAERQTLMFSATLPGWAKRLVGRHLKEPTVVNVVQDEEVSYREIAIEASPSARMSALSDL
LHAHGPERAIVFTRTKKEADEVARALTARGHAAEAVHGDLNQTQRERSVGRFRSGQVGVL
VATDVAARGLDIPEVDLVVHLRLPERAESYQHRSGRTGRAGRSGTVIIFHSSRERRELGQ
LERAVGRKFEHGRAPAPEEVQQAKIAGLLRRAAAQSEEDRAVWREVAQAWIEREDVESLA
GLLAMLLGGAPKPRSLLTGDEGWRTLELEAPQLSAGKVVAVLKRAGFSDIGRIQLAGGVA
YADVRAGELDRLDAVQGLRARPAAKVKAAPAPARRNERPRGKRRRVSA
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atgggcggggccccggaaaggaacagcatgtttagagaactcggactcagcgagcaggcc
ttggccgcgctcgaagaaaaaggcatcgccacccccacccccatccagaacgaggcccta
cccgccgcactcgcggggggcgacgtgctcggcctggcgcgcaccggcaccggcaagacg
ctggccttcgcgctgcccatagccgagcggctcgagccctcgcgcacgcccggccgccct
ccccgggcgctggtcctcgcgcccacgcgcgagctcgcgctgcaggtcgcgggcgagctg
gagtgggtggcgccgcacctgcggatcgtcaccgtctacggcggtaccggctacggcagc
caggcggcggcgctgaagcgcggcgccgacgtcgtggtggccacgcccggccgcgccatc
gactacctcaaccgtggggtgctcgacctcgcgcaggtgcgcatcgccgtcctcgacgag
gccgacgagatgctctcgatgggcttcgaagaggccgtggagaccctgctcggggctacg
cccgcagagcgccagaccctgatgttctcggccacccttcccggctgggccaagcggctg
gtgggccgtcacctgaaggagccgaccgtcgtcaacgtcgttcaggacgaggaggtcagc
taccgcgagatcgccatcgaggcctcgccctccgcgcgcatgagcgcgctctcggacctg
ctgcatgcgcacggacccgagcgcgccatcgtcttcacccgcaccaagaaggaggccgac
gaggtggcccgggcgctcaccgcccgcgggcacgccgccgaagcggtgcacggcgacctc
aaccagacccagcgcgagcgctccgtcggccgtttccgcagcggccaggtgggcgtgctc
gtcgccaccgacgtggccgcgcgcggcctcgacatccccgaggtggacctggtcgtccac
ctccgcctccccgagcgggccgagtcctaccagcaccgctccggccgtaccggccgtgcc
ggccgcagcggcaccgtgatcatctttcactcgagccgcgagcgccgcgagctggggcag
ctcgagcgcgccgtcgggcgcaagttcgagcacggccgcgcccccgcccccgaggaggtg
cagcaggccaagatcgccgggttgctgcgccgcgccgccgcgcagtccgaggaagaccgc
gccgtttggcgcgaggtcgcccaggcctggatcgagcgcgaggacgtcgagtcgctcgcg
ggtctgctggccatgctcctggggggcgcgccgaagccgcgcagcctgctgaccggcgac
gagggttggcgcaccttggagctggaggccccgcagctttcggccggcaaggtcgtggcc
gtgctcaagcgcgccggcttttccgacatcggacgcatccagctcgccggcggcgtcgcc
tacgccgacgttcgcgccggcgagctggaccggctggacgcggttcagggcctgcgggcg
cgcccggccgccaaggtcaaggccgccccggccccggcgcggcgcaacgagcggccgcgc
ggtaagcgccgccgcgtgagcgcctga
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