Oceanithermus profundus: Ocepr_0626
Help
Entry
Ocepr_0626 CDS
T01369
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
opr
Oceanithermus profundus
Pathway
opr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
opr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Ocepr_0626
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
opr03021
]
Ocepr_0626
03400 DNA repair and recombination proteins [BR:
opr03400
]
Ocepr_0626
Enzymes [BR:
opr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Ocepr_0626
Transcription machinery [BR:
opr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Ocepr_0626
DNA repair and recombination proteins [BR:
opr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Ocepr_0626
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RPOC_hybrid
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF4892
Motif
Other DBs
NCBI-ProteinID:
ADR36084
UniProt:
E4U7Z4
LinkDB
All DBs
Position
628022..632608
Genome browser
AA seq
1528 aa
AA seq
DB search
MKRELKKVRIALASPEKIHAWSYGEVEKPETINYRTLKPERDGLFDERIFGPVKDYECAC
GKYKRQRFEGKVCERCGVEVTKSIVRRYRMGHIELATPAAHIWYVKDVPSKIGTLLDLTA
GELEQVLYFAKYIVIDPGGAMLEGVPIKRGELLSDEQYRELKFGRQETYAIPLGTDALIK
DGDYVTKGQELAPGVVSKMDGVALFRFPRRISVEYVERERAHLVLPREAWIEADRYEAGE
PIAELADPFVFESEAAGVAEVLEWDEGALVRLRDPESDEVVAVYLVPVGFALKVGHGELV
SAGDPIAAAEPGAVRLPRGVKVTELEAEEEGDLVYLSMTVEWARVQDYRLEPHMHVLVGE
GAEVLKGDKLVGAIDPEEEVHAEADGIVHLHEPASIVVMKARLYPFEDDVEVTTGDRIAP
GDVLADGGKVTSEIYGRVEVDLVRQVVRVIESYDIDARMGAEAVQVLLSELDLDQLEAEL
EEEMLGPSRHKRSRARKRLEIVRAFKASGNRPEWMVLEAVPVLPPDLRPMVQVDGGRFAT
SDLNDLYRRLINRNNRLKKLMSQGAPEMIIRNEKRMLQEAVDALIDNGRRGSPVTNPGSD
RALRSLTDILSGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQTGLPKRMALELFKPFL
LRRMEEKGIAANIKQARRMLERHRDIKDEVWDALEEVIHGKVVLLNRAPTLHRLGIQAFQ
PVLVEGQSIQLHPLVCEAFNADFDGDQMAVHVPLSSYAQAEARVQMLSAHNLLSPASGEP
IAKPSRDIILGLYYITQLRREKKGAGREFATPVEAIEAYDKGEIALNAPIKIAGEETTVG
RYKYVFASVDEAIVAVQHGLIDLQDVVSIRVGDEVRVTSPGRALFVRMVIEAIKDGDPEA
EVPEELLNYDVAQEKNSLRDLVYRSFLLLGIEKTARLLDVLKAEGFHFSTSSGITIGIDD
VIIPPEKEQYLREADEALDKIENAYKQGLLTDEERRRQIIKLWADVTEKVTEALFKNFEE
KYPFNPLYVMAQSGARGNRTQIRQLGGMRGLMAKPSGEIMEVPVRANFREGLTVLEYFIS
THGARKGGADTALRTADSGYLTRKLVDVAHEIVVREEDCGTTDFMEVPLFQTSATGERSL
RREGEIEQTLYGRTVARDFEAGGRSFAEGQMLSREDVDALVAAARAGELEAVPVYSPLTC
RTEYGVCRKCYGYDLSMAQPVSIGETVGVVAAESIGEPGTQLTMRTFHTGGVATGSDITL
GLPRVIELFEARRPKVKAIIAEIDGEVEVEETDDKLLVRVVSGEFKKEYKIDKAARLTVR
SGDHVTAGTPLTRGAVDPHQLLEAQGPEAVQRYLVSEIQRVYRAQGVKVHDKHIEVIVRQ
MLKYVEVTDPGESKLLEGQVLERWEVERVNEALMEEGKMPASWKPLLMGVTKSALNTRSW
LSAASFQHTTHVLTEAAIWGKKDELIGLKENVILGKLIPAGTGTDFVRRTQVVDERTLER
LKEARKAAEEVVATQVLPGAGAEAGAEG
NT seq
4587 nt
NT seq
+upstream
nt +downstream
nt
atgaagagagaactcaagaaagtacggatcgccctggccagcccggagaagatccacgcc
tggtcgtacggcgaggtcgagaagccggagacgatcaactaccgcacgctcaagcccgag
cgcgacggcctcttcgacgagcgcatcttcggtccggtcaaggactacgagtgcgcctgc
ggcaagtacaagcgccagcgcttcgagggcaaggtctgcgaacgctgcggcgtcgaggtc
accaagtcgatcgtgcgccgctaccgcatgggccacatcgagctggccaccccggcggcc
cacatctggtacgtcaaggacgtgcccagcaagatcggcaccctgctcgacctgacggcg
ggcgagctggagcaggtgctctacttcgccaagtacatcgtcatcgatcccggcggggcg
atgctcgagggcgtgcccatcaagcgcggcgagctcctcagcgacgagcagtaccgcgag
ctcaagttcggccgtcaggagacctacgccatccccctgggtaccgacgccctgatcaag
gacggcgactacgtgaccaagggccaggagctggccccgggcgtggtcagcaagatggac
ggggtggcgctcttccgcttcccccgccgcatctcggtggagtacgtcgagcgcgagcgc
gcccacctggtgctgccgcgggaggcctggatcgaggccgaccgctacgaggcgggcgag
cccatcgccgaactggccgaccccttcgtcttcgagagcgaggccgcgggcgtggccgag
gtgctcgagtgggacgagggggcgttggtgcgcctgcgcgaccccgagagcgacgaagtg
gtggccgtctacctggtgcccgtgggtttcgccctcaaggtggggcacggtgagctggtg
agcgccggcgaccccatcgccgcggccgagccgggggcggtgcgcctgccccgcggggtc
aaggtgactgagctcgaggccgaggaagaaggcgacctcgtctacctctccatgaccgtg
gaatgggcccgggtgcaggactaccggctcgagccccacatgcacgtcctcgtgggcgag
ggcgccgaggtgctcaagggcgacaagctggtgggcgccatcgaccccgaggaggaggtc
cacgccgaggccgacgggatcgtgcacctgcacgagcccgcctcgatcgtggtgatgaag
gcccgcctctaccccttcgaggacgacgtcgaggtcaccaccggcgaccgcatcgccccg
ggcgacgtgctcgccgacggcggcaaggtaacgagcgagatctacggccgcgtcgaagtg
gacctggtgcgccaggtggtgcgcgtcatcgagagctacgacatcgacgcgcgcatgggc
gccgaggccgtgcaggtgctgctcagcgagctcgacctggaccagctcgaggccgagctg
gaagaggagatgctgggccccagccgccacaagcgcagccgcgcccgcaagcgcctggag
atcgtccgcgccttcaaggcctcgggcaaccgccccgagtggatggtgctggaggcggtg
ccggtgctgccgcccgacctgcgcccgatggtccaggtcgacggcggccgcttcgccacc
agcgacctcaacgacctctaccgccgcctcatcaaccgcaacaaccgcctcaagaagctg
atgagccagggggcgccggagatgatcatccgcaacgagaagcggatgctccaggaggcg
gtggacgccctcatcgacaacggccgccgcggcagccccgtcaccaaccccggttccgac
cgggcgctgcgctcgctcaccgacatcctctcgggcaagcagggccgcttccgccagaac
ctgctgggcaagcgcgtggactactcgggccgctcggtgatcgtcgtggggccgcagctc
aagctgcaccagacgggcctgcccaagcggatggcgctcgagctcttcaagcccttcctg
ctgcgccgcatggaggagaagggcatcgccgccaacatcaagcaggcgcggcggatgctg
gaacgccaccgcgacatcaaggacgaggtctgggacgcgctggaagaggtgatccacggc
aaggtggtcctcctcaaccgcgcccccacgctgcaccgtctcggcatccaggccttccag
ccggtgctcgtcgagggccagtcgatccagctgcacccgctcgtctgcgaggccttcaac
gccgacttcgacggcgaccagatggccgtgcacgtgccgctttcgagctacgcccaggcc
gaggcccgggtgcagatgctgagcgcccacaacctcctcagccccgcctcgggcgagccg
atcgccaagcccagccgcgacatcatcctgggcctctactacatcacccagctgcgtcgg
gagaagaagggcgcgggccgtgagttcgccaccccggtcgaggccatcgaggcctacgac
aagggcgagatcgccctgaacgcccccatcaagatcgccggcgaagagaccaccgtcggc
cgctacaagtacgtcttcgccagcgtagacgaggccatcgtcgccgtgcagcacggcctg
atcgacctgcaagacgtggtcagcatccgcgtgggcgacgaggtccgggtcaccagcccc
ggccgcgccctcttcgtgcgcatggtcatcgaggccatcaaggacggcgaccccgaggcc
gaagtgcccgaggagctgctcaactacgacgtggcgcaggagaagaactcgctgcgcgac
ctcgtctaccgctccttcctgctgctcggcatcgagaagaccgcgcgcctgctcgacgtg
ctcaaggccgagggcttccacttctccacctcctcggggatcacgatcggcatcgacgac
gtgatcatcccgcccgagaaggagcagtacctgcgcgaggccgacgaggccctcgacaag
atcgagaacgcctacaagcagggtctgctcaccgacgaggagcgccgccgccagatcatc
aagctctgggccgacgtgaccgagaaggtgaccgaggcgctcttcaagaacttcgaggag
aagtaccccttcaacccgctctacgtgatggcccagtcgggcgcccgcggtaaccgcacc
cagatccgccagctcggcgggatgcgcggcctcatggccaagccttcgggcgagatcatg
gaggtcccggtgcgggccaacttccgcgaagggctgaccgtgctcgagtacttcatctcc
acgcacggcgcccgcaagggcggggccgacaccgcgctccgcaccgccgactcgggctac
ctgacccgcaagctggtcgacgtggcccacgagatcgtagtgcgcgaggaggactgcggc
accaccgacttcatggaggtgcccctcttccagacctcggccaccggcgagcgcagcctg
cgccgcgagggcgagatcgagcagaccctctacggccgcaccgtcgcccgcgacttcgag
gccggcggccgcagcttcgccgagggccagatgctcagccgcgaggacgtggacgccctc
gtcgccgcggcgcgcgccggcgagctggaggccgtgccggtctacagcccgctcacctgc
cgcaccgagtacggcgtctgccgcaagtgctacggctacgacctctccatggcccagccg
gtctcgatcggcgagaccgtgggcgtggtcgcggccgagtcgatcggcgagccgggcacg
cagctgacgatgcgcaccttccacaccggcggcgtggccaccggctccgacatcaccctg
ggtctgccgcgcgtgatcgagctcttcgaagcgcgccggcccaaggtcaaagcgatcatc
gccgagatcgacggcgaggtcgaggtcgaggagaccgacgacaagctgctggtgcgggtg
gtcagcggtgaattcaagaaggagtacaagatcgacaaggccgcccgccttaccgtgcgt
tcgggcgaccacgtcaccgccggcaccccgctcacccgcggcgcggtggacccgcaccag
ttgctcgaggcccagggccccgaggcggtgcagcgctacctggtgagcgagatccagcgc
gtctaccgcgcccagggcgtgaaggtgcacgacaagcacatcgaggtgatcgtgcgccag
atgctcaagtacgtcgaggtcaccgaccccggcgagtccaagctgctcgaagggcaggtg
ctggagcgctgggaggtggagcgcgtcaacgaagcgctgatggaagagggcaagatgccc
gcgagctggaagccgctcctcatgggcgtgaccaagagcgcgctcaacacccgctcctgg
ctctccgcggccagcttccagcacaccacccacgtgctcaccgaggcggcgatctggggc
aagaaggacgagctcatcggcctcaaggagaacgtcatcctcggcaagctcatccccgcg
ggcacgggcaccgacttcgtgcgccgcacccaggtggtggacgagcgcaccctcgagcgc
ctcaaggaggcccgcaaggccgccgaagaggtggtcgcaacccaggttctgcccggcgcc
ggcgccgaagccggggccgaaggctag
DBGET
integrated database retrieval system
