Zophobihabitans entericus: IPMB12_01180
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Entry
IPMB12_01180 CDS
T06493
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
orb
Zophobihabitans entericus
Pathway
orb03410
Base excision repair
orb03430
Mismatch repair
orb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
orb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
IPMB12_01180 (recJ)
03430 Mismatch repair
IPMB12_01180 (recJ)
03440 Homologous recombination
IPMB12_01180 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
orb03400
]
IPMB12_01180 (recJ)
DNA repair and recombination proteins [BR:
orb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
IPMB12_01180 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
IPMB12_01180 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IPMB12_01180 (recJ)
BRITE hierarchy
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Paralog
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QIQ20411
UniProt:
A0A6G9I874
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All DBs
Position
250983..252716
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AA seq
577 aa
AA seq
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MNKILQQRAPLVDSAALSDDIHPLLRRIYALRGIRSSDELERSASGLLNYKQLNGIDNAV
DVLYQSLSQQQRIMVVGDFDTDGATSTALMVKALRYMGAKFVDYIVPDRFEDGYGLGINV
VKRAIEQKAELIITVDNGISSFEGVDFAHAHGLKVIITDHHLPALTLPDADAIINPNLSN
CTFPSKNLAGVGIAFYFMLALRAHLRQMDWFSKNQLAETNLANLLDLVALGTVADVVVLD
NNNRILVHQGLSRIRSGYCCAGIKAMLDIAKKDQSKLTTTDLSFTLAPRLNAAGRMETMS
LGIELLLCEDYAKATEMATELDALNSTRRDVEQSMQIEAMAFVQQIETTLQEIPSSLVIY
HPEWHQGVIGILSARIKDKFYRPVISFAAAGNNQLKGSGRSIPGFHLRDALERLDTLYPD
LIMCFGGHAMAAGLTIEEHKLDIFKQRFEQLTSEMIDEAMLNNIVLSDGPLDKDWFNCET
AKVLQEGGPWGQGFPEPMFDGEFKLHQQRIVGDKHLKIVIEPADGGPLIEGIAFNVDTLQ
WPDLSIKRIKLAYNLDINDFRGNQNVQLLVRHLWPVA
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaaatactacaacagcgagcaccactggttgatagcgctgctctttctgatgac
atacatccactactgcgtcgcatctatgcattgcgaggcattcgctcatccgatgaactt
gaacgtagtgccagtggtttattaaactacaagcaactcaatggtattgataatgctgta
gacgttttgtatcagtcactcagccaacagcaacgaattatggtcgttggtgactttgat
accgacggtgcaaccagtaccgctttaatggttaaagcgcttcgttacatgggtgcaaag
tttgttgattatattgttcctgaccgttttgaagatggctatggtcttgggatcaacgtt
gttaaacgtgctatcgaacaaaaagcagagctaattattaccgttgataatggtatttcc
tcttttgaaggggtcgattttgctcatgcccacggcttaaaagtgattatcacagatcac
catttaccggccttaacgctgccagatgccgatgcgattatcaatcccaatttatccaat
tgtactttcccatccaagaatctggctggtgttggtattgctttctattttatgctggca
ctacgtgcacatttgcgtcaaatggattggtttagtaaaaaccagttagcggaaactaac
ctggctaatttactggatttagtggcacttggaactgtagctgatgtggtagttttagat
aataacaaccgaattttagtacatcagggcttaagccgtattcgctcaggttattgctgt
gcaggtattaaagcgatgctggatatcgctaaaaaagatcaaagtaaactaacaaccaca
gatttaagttttaccttagcgccacgcctgaatgctgccggacgtatggaaaccatgtcc
ttaggaattgagctgctgctgtgtgaagactatgccaaagcaaccgaaatggccacagaa
ctcgatgccttaaacagcacgcgccgtgacgttgaacaatccatgcagattgaagcaatg
gcatttgtccagcagatcgaaaccacgctgcaggaaattccaagtagtctggtcatttac
catccagagtggcatcagggtgtgattggtattttatcagcccgaattaaagacaaattt
tatcgtcctgtgatctcttttgccgcggcgggcaataatcagttaaaagggtctggtcgt
tcaattcctggtttccatttacgagatgcactggaacgtttagatacgctctatcctgat
ttaatcatgtgttttggtggccatgcgatggcggctggtttaaccattgaagaacataag
ctcgacatctttaaacaacgttttgaacaactgacatctgaaatgatcgatgaagctatg
ctcaataacattgtgttatctgatggaccactggacaaagattggtttaattgtgaaact
gctaaagttttacaagagggagggccgtgggggcaaggttttccagaaccgatgtttgac
ggtgaatttaagttgcatcaacaacgtattgttggcgacaaacatctaaaaatcgttatc
gaaccagcggacggcgggccacttattgagggtatcgcttttaatgttgatacattacaa
tggcctgacctctcaataaaaagaatcaaattagcgtataatttagatattaatgatttc
agaggcaatcaaaacgttcagctgttagtacgtcatttgtggccggtagcataa
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