Zophobihabitans entericus: IPMB12_02315
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Entry
IPMB12_02315 CDS
T06493
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
orb
Zophobihabitans entericus
Pathway
orb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
orb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IPMB12_02315 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
orb03021
]
IPMB12_02315 (rpoB)
03400 DNA repair and recombination proteins [BR:
orb03400
]
IPMB12_02315 (rpoB)
Enzymes [BR:
orb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IPMB12_02315 (rpoB)
Transcription machinery [BR:
orb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IPMB12_02315 (rpoB)
DNA repair and recombination proteins [BR:
orb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IPMB12_02315 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Cas_Cas2CT1978
Motif
Other DBs
NCBI-ProteinID:
QIQ20620
UniProt:
A0A6G9IAL2
LinkDB
All DBs
Position
504493..508521
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKNFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSIFPIK
SYSGSAELQYVSYKLGEPVFDVKECQIRGITYSAPLRVKLRLVIYDKDAPEGTVKDIKEQ
DVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFARIDRRRKLSATIILRALGYDTEQILDLFFDKVTFEVAKSKLKME
LVPDRLRGETALFDIEVKGKVYIEKGRRITARHIRQLEKDNITKIEVPVEYIVGKILAKD
YTNSSTGVVIAPANTPITLELLAELTGAGFKKIETLFTNDLDHGPYMSETLRNDPTTDRL
GALVEIYRMMRPGEPPTKDAAESLFDNLFFSEERYDLSAVGRMKFNRSLGREETEGAGIL
SKEDIVDVLKKLIDIRNGHGDVDDIDHLGNRRIRSVGEMAENQFRIGLVRVERAVKERLS
LGDLDALMPQDMINAKPISAAIREFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYARTNEYGFLETPYRKVVDGTVT
DEIHYLSAIDESAYVIAQANSNLDNKGRFSEELVTCRENGESGLYSPEQVNYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLKAEKPFVGTGMERAVAVDSGVTIVAKR
GGTVQYVDASRIVVHVNEDEMYAGEAGIDIYNLTKYTRSNQNTCINQIPCVALNELVERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVMDDRFTSIHIQELSCIS
RDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVQGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDTSLRVPNGVSGTVIDVQVFTRDGVVKDKRALEIEDMQLKEVKKDL
TEERQILEAALFSRIREVLISGGIAAAKLDVLSHDKWLTIGLSDEDKQNQLEQLAQQYDE
IKAEFDKKLEAKRTKITQGDDLQPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGQPVDLVLNPLGVPSRMNIGQILETHLGMAAKGIGDKIDAMLKQQQEIAK
LRAFIQKAYDLGLGVGQKVDVKSFTDEEVMTLAQNLRNGMPLATPVFDGAKEAEIKSLLE
LGDLPTSGQITLFDGRTGEAFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPAIP
ESFNVLLKEIRSLGINIELDEE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaagcgaattcgtaagaattttggtaaacgtccacaa
gtgttggatataccttatcttctttctattcaacttgattcgttccagaagtttattgaa
caagatcctgaaggtcaatatggtctggaagcggctttccgttctatcttccctataaaa
agttatagtggtagtgctgaactacaatatgtgagttataaactcggtgagcctgttttt
gatgttaaagaatgtcaaattcgtggaatcacgtattcagcgccacttcgcgttaaatta
cgcttagtcatttatgataaagatgcgccagaaggcactgttaaagacattaaagaacaa
gatgtctatatgggtgaaattcctttaatgacagataacggaacatttgttattaatggt
actgagcgtgttattgtatcccagctacatcgtagccctggtgtattcttcgacagcgat
aaaggtaaaacacactcttcaggtaaagtgctatataacgcacgtattatcccttatcgt
ggctcatggcttgattttgaattcgatccaaaagacaacctgtttgcacgtattgaccgc
cgtcgtaaattatctgcgacgattattttacgtgcacttggttatgatacagagcaaatt
cttgatttattctttgataaagtaacgtttgaagttgctaagtctaagttaaaaatggag
cttgtaccagatcgcctgcgtggtgaaactgctctgtttgatatcgaagtcaaaggtaaa
gtttatatcgagaaaggccgtcgtattactgcgcgccatattcgtcagttagaaaaagac
aatattacaaaaatagaagttcctgtcgaatatatcgttggtaagattctggctaaagat
tacaccaattcaagtactggtgtcgtgattgctccggcaaataccccaattactttagaa
ttattggcagaattaactggtgctggcttcaagaaaattgaaactctgttcactaatgat
ttagaccacggtccgtatatgtctgagacattacgtaatgacccgacaactgatcgttta
ggtgcgctggttgaaatttatcgaatgatgcgcccaggtgaaccaccaacaaaagatgct
gcagagtcattatttgataacctattcttctctgaagagcgttatgatttatcggctgta
ggtcgtatgaaattcaaccgttcactaggtcgtgaagagacagaaggtgcgggaatttta
tctaaagaagatatcgttgatgtactgaaaaaactgatcgatattcgtaacggtcacggt
gatgtggatgatatcgatcaccttggtaaccgtcgtattcgttctgttggtgaaatggca
gaaaaccaattccgtatcggcttagtacgtgttgaacgtgcagtgaaagagcgtttatct
cttggtgatcttgatgcgcttatgccacaagatatgatcaatgcgaaacctatttcagca
gcaattcgtgaattctttggttcaagtcagttatctcaatttatggatcaaaacaatcca
ttatcagagattactcacaaacgtcgtatttctgctttaggccctggtggtttaactcgt
gaacgtgctggctttgaagtacgtgacgtacatccgactcactatggtcgtgtatgtcca
atcgaaacgcctgaaggtccgaatatcggtctgattaactcgctttctgtttatgctcgt
actaacgaatatggtttcttagaaactccataccgtaaagtggttgatggcactgtaaca
gatgagattcattatttatcagctattgatgaaagtgcttatgttattgcacaggctaac
tctaacttagacaacaaaggtcgtttcagtgaagagttagtgacttgtcgtgaaaacggt
gagtctggcttatatagccctgaacaagttaactatatggacgtatcaacacaacaagtc
gtttctgttggtgcttcacttattccattccttgaacatgacgatgcgaaccgtgctcta
atgggtgcgaacatgcaacgtcaggccgttccaacactgaaagcggaaaaaccgtttgtt
ggtacaggtatggagcgcgctgtagcggttgactcaggggttactatcgttgcaaaacgt
ggtggtactgttcaatacgttgatgcatcacgtatcgttgttcatgttaatgaagacgaa
atgtatgcaggcgaagctggtattgatatttacaatttaactaaatatacccgttctaac
caaaatacgtgtattaaccaaattccatgtgtggctttaaatgagctagttgaacgtggt
gatgtgcttgctgatggtccttcaacagaccttggtgaacttgcacttggtcaaaacatg
cgcgtggcattcatgccatggaatggttataacttcgaagactcgattcttgtttctgaa
cgtgtagtgatggacgatcgttttacttcaatccatatccaggaattatcatgtatttct
cgtgacactaaactcggtgctgaagagattactgctgatattccaaacgtgggtgaagct
gcgctatctaaattagacgaatcaggtatcgtgtatatcggtgcagaagttcaaggtggt
gatatccttgttggtaaagtaacaccaaaaggtgaaacacaacttacaccagaagaaaaa
cttctacgtgcgatcttcggtgaaaaagcctctgatgttaaagatacgtctttacgtgta
ccaaatggtgtttctggtacagttattgatgttcaggtctttactcgtgatggcgtagta
aaagataaacgtgcacttgaaatcgaagatatgcaactgaaagaagtgaagaaagacttg
actgaagaacgtcaaattcttgaagcagctcttttctcgcgtattcgtgaagtattgatt
tctggtggtattgctgccgctaaacttgacgtattatctcacgataaatggttaacaatt
ggtctgtctgatgaagataaacaaaatcagttagaacaactagcacaacaatatgatgaa
attaaagctgagtttgataaaaaacttgaagctaaacgcactaagatcacccaaggtgat
gatttacaaccaggtgtactgaagattgttaaagtgtacttagcggtgaaacgtcaaatt
caaccgggtgataaaatggcgggtcgtcatggtaacaaaggtgttatctctaagattaac
ccaattgaagatatgccatatgacgaaaacggccaaccggttgacttagtactaaacccg
ttaggtgttccatcacgtatgaacatcggtcagatccttgaaacccatcttggtatggcg
gcaaaaggtatcggtgataagattgatgcaatgctgaaacaacagcaagaaattgctaag
ttacgtgcattcatccaaaaagcttatgatcttggacttggtgttggtcagaaagtagat
gttaaatcatttactgatgaagaagtgatgacactggcacaaaatctacgtaatggtatg
ccacttgcaacaccagtatttgatggtgcaaaagaagcagaaattaaatcattactagag
cttggcgatcttccaacgtctggtcaaattacgttatttgacggacgtactggtgaagcg
tttgaacgtcctgttactgttggttatatgtacatgttgaaactgaatcaccttgttgat
gacaagatgcatgcgcgttcaaccggttcatatagtctggttacacaacaaccacttggc
ggtaaagcgcaatttggtggtcagcgtttcggtgagatggaagtatgggcacttgaagct
tatggtgctgcttacacactacaagaaatgcttactgttaaatcagatgacgtaaatggt
cgtactaagatgtataaaaatattgtggatggtaatcatcaaatggaacctgcgattccg
gaatcatttaacgtattgttaaaagaaattcgttcgctaggtatcaatatcgagttagac
gaagagtaa
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