Zophobihabitans entericus: IPMB12_03600
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Entry
IPMB12_03600 CDS
T06493
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
orb
Zophobihabitans entericus
Pathway
orb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
orb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IPMB12_03600 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
orb03019
]
IPMB12_03600 (rne)
03009 Ribosome biogenesis [BR:
orb03009
]
IPMB12_03600 (rne)
Enzymes [BR:
orb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
IPMB12_03600 (rne)
Messenger RNA biogenesis [BR:
orb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IPMB12_03600 (rne)
Ribosome biogenesis [BR:
orb03009
]
Prokaryotic type
rRNA processing factors
IPMB12_03600 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
PNPase_C
Motif
Other DBs
NCBI-ProteinID:
QIQ20842
UniProt:
A0A6G9IAI3
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All DBs
Position
complement(787471..790377)
Genome browser
AA seq
968 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQKLYDLDIESPGHEQKKANIYKGTITKINPSLEAAFVSY
GGERDGFLSLKEIADNYFPSNISGRKSIKHLQEGQEVLVQIEKEIRGKKGAALTTYISLA
GSYLVLMPNDPRAGGVSRRIEGEDRADLKRIIDSLEKPKGMGVIARTAGVGKSQEELQQD
LNALMVYWEAIQTEAKNHPAPSLIHKESDIITRAFRDYLRADVGEILVDNVQVLEVAKKR
LAGLGRTEYLNRIKLYTNDVPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAID
INSAKSIRGSDIEETAFTTNLEAAEEIARQLRLRDLGGLIVIDFIDMTPIRNQREVENCL
KEAMKNDRARIQTTRISRFGLLEMSRQRLSPSLREATHHICPRCSGTGTVRDNNSLSLSI
LRLINEEALKDNTSQIDVIVPVPIASYLLNEKRRAISKIEAEHPEIKIVIAADEEMETPQ
YRVIRKRRGEEMDVLSYALPKLIRELEEEEEDTTPEVVEEEAVLSGVTVDIQAAAAAAVA
NSAASKPKAQPKSKKPEENKGIIASLFSGLRNLFKPSEVPGTDKKETKKTEHVRHEKRPR
PQQNRKPRNSNKTETENSSPETKEPKNNRRSRNNNKGNANNNAANVETVKNEALAAVVEE
TKSAAPEKREPKPRRAQRNLTKSVRVTDGENKADTKPVNVAPLPVVIPKPVAEEDALPLE
STSESSENINSNEDSSRRVRRTPRHLRMNGQRRKRQKENYPSESPMPLSMAVVSPEFASG
KVCIDYSLLTPVVNKSDDAENNNDTSDSASVANTPVVVAPVTHEPVVTVEKTMTETIDLP
FVEPVVSTSVTTTEPSVANQPVNEAPASTAPATNTVVAVLKETQVCTGDKVTTKALAPTD
VSYQSRTKHSSSGMTKAPAPAYAPSDFSITYAVFHDEHYRFNGKGHAGGNSANNQASAQA
TKPTQVTE
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaatgcgacccagcaagaagagctgcgcgttgcactcgttgac
ggtcagaagctttatgatttagatatcgagagccctggtcatgaacagaaaaaagcgaat
atttacaaaggcaccatcaccaaaatcaatccaagtttagaagccgcatttgtttcctat
ggcggtgaacgagacggattcctctccctcaaagagatcgctgataactacttcccttct
aatatctccggacgtaaaagtattaaacatcttcaggaaggtcaggaagttttagtccag
attgagaaagagatccgtggtaaaaaaggtgctgcgttaacaacttatatcagcttagcc
ggtagttatttagtacttatgccaaatgacccacgtgctggtggtgtgtcacgccgtatt
gaaggtgaagacagagctgacctaaaacgcattattgactcactggaaaaaccaaaaggt
atgggtgttatcgctcgtactgcaggtgttggcaaaagtcaggaagagttgcaacaagac
ttaaatgcactaatggtgtattgggaagccattcaaactgaagcgaaaaaccatcctgcg
ccaagtctgatccacaaagaaagtgatattattaccagagcatttcgagattacctgcgt
gcagatgtcggtgaaattctggttgataatgttcaggtgctagaagttgctaagaaacgc
ttagcaggccttggtcgtactgaatatcttaaccgtattaaactgtacaccaatgatgta
ccgttatttagccattaccaaatcgagtcacaaattgagtcagctttccagcgtgaagtt
cgcctgccatcaggtggttctattgttatcgataccacagaagcactaactgctatcgat
attaactctgctaaatcaatccgtggtagtgatatcgaagaaacagccttcacaaccaac
cttgaagcagcagaagagatcgcacgtcagttacgtctgcgtgaccttgggggtttgatt
gttatcgactttatcgatatgaccccgattcgtaaccagcgtgaagttgaaaactgccta
aaagaagcaatgaaaaacgatcgtgcacgtattcaaacgacacgtatttctcgttttggc
ttacttgagatgtctcgtcagcgtttaagcccgtcactacgtgaagcaacacaccatatt
tgtccacgctgtagtggtacaggtacagtacgtgataataattccttgtccctgtctatc
ctgcgcttaatcaatgaagaagcgttaaaagacaacacttcacaaattgatgttatcgtt
ccagtaccaatcgccagttatttattgaatgagaaacgccgcgcgattagtaaaattgaa
gcagaacatccggaaattaaaattgttattgctgctgatgaagagatggaaacaccacaa
tatcgtgtgatccgtaagcgtcgtggcgaagaaatggacgtactaagttacgctctgcca
aaactcattcgtgaactcgaagaggaagaagaagacacaacaccggaagtggttgaagaa
gaagccgtactttctggtgtaactgttgatattcaggcagcggcagcagcggctgtggca
aattcagcagctagtaagcccaaagcacaaccaaagagtaaaaaacctgaagaaaacaaa
ggtattatcgcttcactattctcaggcctacgcaacttgtttaaaccttcagaagttcct
ggtactgataaaaaagaaaccaagaaaactgaacacgttcgtcacgagaagagacctcgt
ccacaacaaaatagaaagcctcgtaatagcaataagacagagactgaaaatagctctcct
gaaactaaagagccgaaaaacaatcgtcgttcacgtaataacaacaaaggtaatgcaaac
aacaacgcagccaatgttgaaacggtaaaaaatgaagctctggcagcagttgttgaagaa
accaaatcagctgcaccagaaaaacgtgagccaaaaccacgcagagcacagcgtaatctg
actaagagtgttcgtgttactgatggtgagaataaagcagatacaaaaccagttaacgtt
gccccactaccggttgtgattccaaagcctgtagcagaagaagatgcattaccactggaa
agtacaagtgaaagttcagaaaatattaactcaaacgaggattcttctcgtcgggtcaga
cgtacaccacgtcatttaagaatgaatggccagcgtcgtaaacgtcagaaagagaattat
ccatcagaatcaccaatgccactaagtatggcagtggtatcacctgagtttgcttcaggt
aaagtctgcattgattattcactacttacgccagtagtcaacaagtcagatgatgctgaa
aataataatgatacctctgacagtgcgtcagtcgctaatactcctgtagttgtagcgcct
gttactcatgaaccagtagttactgttgaaaaaacaatgactgaaacaatagatttacca
tttgttgagccagtcgtttcaacttcggttactaccacggagccgtctgttgctaatcaa
cctgttaatgaagcgcctgcgtcaacggcaccagcaactaacaccgttgtggctgtcctt
aaagaaactcaagtgtgtactggggataaagtgacaacaaaagctttagcacctacagat
gtttcttaccaaagtcgtactaaacattcatcatcaggtatgaccaaagcaccagctccg
gcttatgctccatcggacttctctatcacttatgctgtgttccatgatgaacattaccgt
tttaacggtaaaggtcatgcgggtggtaatagtgcgaacaatcaggcttctgcacaagca
accaaaccaacacaagtaacagagtaa
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