Zophobihabitans entericus: IPMB12_04855
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Entry
IPMB12_04855 CDS
T06493
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
orb
Zophobihabitans entericus
Pathway
orb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
orb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
IPMB12_04855 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
orb03400
]
IPMB12_04855 (recD)
Enzymes [BR:
orb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
IPMB12_04855 (recD)
DNA repair and recombination proteins [BR:
orb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
IPMB12_04855 (recD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
Viral_helicase1
AAA_11
SH3_13
NAT10_TcmA_helicase
AAA_22
SLFN-g3_helicase
UvrD-helicase
UvrD_C
DEAD
nSTAND3
PhoH
AAA_16
AAA
AAA_28
AAA_24
SRP54
ResIII
T2SSE
MukB
TrwB_AAD_bind
CbiA
AAA_17
NTPase_1
DUF87
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
QIQ21068
UniProt:
A0A6G9IA08
LinkDB
All DBs
Position
1073455..1075347
Genome browser
AA seq
630 aa
AA seq
DB search
MHDLYCQAIERGYLTSLDVHLGQFLASRMGFSESDQNDDQALRKARFSFLVAWLSAENRA
GHVCLNLNYLNPSRIFSGRDYELVNHIWTQLENPTGQDWLDILTDNITVSGGSENTPLIL
WQSRLYFQRMWLDESLVADYFLQASQTMSEVSGQLPVILDQLFPEQNREIDWQKVAVAVA
LTRKVAIISGGPGTGKTTTVAKLLAALYLSQIDTYSSLRIVAAAPTGKAAARLTESLSQA
FTALPVSDELRQSLPQEALTLHRLLGAKQNQRSVIHNADNPLHLDVLIIDEASMVDLSMM
AKVIEALPVHARLILIGDREQLSSVEAGAVLGDLCYFAQSGYSPERGAELDRLTHYQLPT
EKMYSPVSDSIGLLQKSYRFTQSSGIGQLANSIKLGEVAAVKNILLQSQYSDIEYFTLHG
EQNYQQAISHCVQGYQTYLNYLTQDIIDHSTALSYFSEFRVLCALREGRFGVQGINRQIE
NYLTSKHYLKSVQDDPWYIGRPVMILKNSPALGIYNGDIGITLYTDASKTKKRVYFQLAD
GSVQGFSPYRLPEHETAFAMTVHKSQGSEFNQVCFIMPTEFSPLLTRSLFYTAVTRAKQK
LLLFADLPVLEKSVQTQIERQSGLVQKLIF
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgcatgacttatattgtcaggctatcgagcggggttatttaacctcgctcgatgttcat
ttaggtcaatttttagcaagcagaatgggcttttctgagtctgatcaaaatgatgatcag
gcactcagaaaagcccgttttagttttctggttgcatggctaagtgcagaaaatcgtgct
ggccatgtctgtttaaatctaaattacttaaatccatcccgaatcttttctggtcgtgat
tatgagctggtcaatcatatctggactcaacttgaaaacccgaccgggcaagactggctg
gatattttaactgataatattacggtgagtggcggcagtgaaaatacaccgcttatctta
tggcagtcccgcctttattttcagcgtatgtggctggatgaaagtcttgtggcggattat
tttttacaagccagccaaacaatgtcagaagtatccggtcaattaccggtaattttagat
cagctattccctgagcaaaacagagagattgactggcaaaaagtggctgtagctgttgcc
ttaaccagaaaggttgctattatttctggtggcccggggacaggtaaaacaaccactgta
gccaaattattagcggcgttatatttgtcacaaattgatacgtattcatctttgcgaatt
gtcgctgcagcaccaacgggtaaagcggcggctcgtttaactgagtctcttagtcaggct
tttactgcgttgccggtgagtgatgaattacgccagtctttaccacaagaggcactgaca
ctccaccgtttactgggtgctaagcaaaatcaacgtagcgttatacataatgctgataat
ccactgcatctagatgtgctaatcattgatgaagcctctatggtggatctatccatgatg
gctaaagtgattgaagcgttgccagttcatgcaaggctaattttaattggtgacagagaa
cagctttcatccgttgaagctggtgcggtactgggtgatttatgctattttgctcagtcc
ggatatagtccggaaaggggagcagaactcgacaggttaactcattatcagttaccgacc
gagaagatgtattctccggtttcagatagtattggtttattgcaaaagagttatcgattt
acacaaagttccggaatagggcaactggcaaatagtattaagctgggagaagtggccgca
gtcaaaaatatcctgctacaatcacaatactcagatattgaatactttactttacatggt
gaacaaaactatcagcaagctatttctcattgtgtgcaaggttatcaaacttaccttaat
tatttaacccaagatataattgatcatagtacagctctgagttatttctctgaatttaga
gtactttgtgctttgcgggaagggcgctttggtgtacagggaatcaatcgccagatagaa
aactatctgacatctaaacattatctaaaatcagtgcaggatgatccatggtatatcggg
cgcccggtaatgattttaaagaatagcccggcactgggtatttataacggtgatattggg
attacgctgtatacagatgccagtaaaactaaaaaacgtgtttacttccagctggccgat
ggttccgttcagggcttctcaccttaccgtttacctgaacacgaaactgcctttgcaatg
acggtacataaatcacaaggttctgaatttaatcaggtttgttttattatgccaacagag
ttttcaccacttttaaccagatcactattttataccgcagtcacccgggccaagcagaag
ttattgttatttgctgatctgccagttttagagaaatcggtacaaactcaaatagaaaga
caaagtggtttagttcaaaagttgattttttaa
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