Zophobihabitans entericus: IPMB12_05060
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Entry
IPMB12_05060 CDS
T06493
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
orb
Zophobihabitans entericus
Pathway
orb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
orb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IPMB12_05060 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
orb03019
]
IPMB12_05060 (rhlB)
Enzymes [BR:
orb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IPMB12_05060 (rhlB)
Messenger RNA biogenesis [BR:
orb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IPMB12_05060 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
CCDC138_C
AAA_22
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
QIQ21100
UniProt:
A0A6G9IBZ2
LinkDB
All DBs
Position
complement(1118165..1119406)
Genome browser
AA seq
413 aa
AA seq
DB search
MTQTYLTEQKFSDFALNPLVISALEKNGFTYCTPIQAKSLPYTTKGQDIAGQGQTGTGKT
VAFLAATFNYLLSHPAHPNHQVNQPRAIIIAPTRELVVQIYNDAKILAEETGLKLGLAYG
GDGYDKQLKILSAGVDILIATTGRLIDYAKQNYINLEAIQVAVLDEADRMFDLGFIRDIR
WLFRHMTPPEQRLTMLFSATLSLNVRELAFEHMNSPVYIEIEPEQKTGHRIKEELFFVSN
EDKLRLLQTLIEEEWPERCIIFANTKVACEMIWRNLVADQHRVGLLTGDIPQKKRLQILE
NFTNGHLDILVATDVAARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGATGHSISLA
CEQYSMNLPAIEEYIQHAIPVSQYDPEALISDLPTPKPFRRQYNRNNKKKRPA
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgactcaaacatatttaactgagcaaaaattttctgattttgccctcaatccattagtg
attagtgctttagaaaaaaatggatttacctattgtactcccattcaggcaaaatcgctt
ccttatacaactaagggacaagatattgctggtcagggtcaaaccgggacaggtaaaact
gtagcttttttggctgcaacattcaactatttacttagtcatccagcacatcctaaccat
caggttaatcagccaagagcaattattattgccccaactcgagaactggtcgtacagatc
tataatgatgctaaaattctggccgaagaaacgggtctgaaattaggtctggcttatggt
ggcgatggttacgataaacaattaaagattctttctgctggcgttgatattttaatcgct
acaacaggtcgtcttattgattatgctaaacagaactatatcaatttagaagcgattcag
gttgccgttttagatgaagccgatcgtatgtttgatcttggttttattcgcgatattcgc
tggttattccgtcatatgacgcctccagaacagcgtttaaccatgctcttttctgctacg
ctatctcttaacgtcagggagcttgctttcgagcacatgaatagcccggtttatatcgaa
atcgaacctgaacaaaaaaccggacatcgtattaaagaagagctattttttgtctctaat
gaagataaactccgtttattgcaaactctgattgaagaagagtggcctgagcgttgtatc
atttttgctaacactaaagttgcttgtgagatgatttggcgcaatttagtcgcagatcaa
catcgggttggcctgttaaccggtgatattccacagaaaaagcgtttacaaattctggaa
aacttcactaatggccatttagatattcttgtcgctacagatgtggctgcacgtggttta
catatccctgctgtaacacatgtctttaactatgatctgcctgatgacagagaagattat
gtccaccgtatcggtcgtactggtcgtgccggtgcaacgggtcactctatttcactggct
tgcgaacaatactctatgaatttaccagctattgaagagtatattcaacatgctattcca
gtcagtcaatatgatccagaagctttaatcagtgatctgccgacaccaaaaccattccgt
cgtcaatataatcgtaataacaaaaagaaacgccctgcttag
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