Zophobihabitans entericus: IPMB12_05070
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Entry
IPMB12_05070 CDS
T06493
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
orb
Zophobihabitans entericus
Pathway
orb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
orb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IPMB12_05070 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
orb03021
]
IPMB12_05070 (rho)
03019 Messenger RNA biogenesis [BR:
orb03019
]
IPMB12_05070 (rho)
Transcription machinery [BR:
orb03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
IPMB12_05070 (rho)
Messenger RNA biogenesis [BR:
orb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
IPMB12_05070 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA
S1CSD-TOTE-2
AAA_25
AAA_22
G2BR
Motif
Other DBs
NCBI-ProteinID:
QIQ21102
UniProt:
A0A6G9IBA0
LinkDB
All DBs
Position
1120151..1121413
Genome browser
AA seq
420 aa
AA seq
DB search
MNLTELKNKPVSELVTLGEKTMGLENLARLRKQDIIFSILKQHAKSGEDIFGDGVLEILQ
DGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEV
NHDKPEDARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGKGQRGLIVAP
PKAGKTMLLQNIAQSIAFNYPECELMVLLIDERPEEVTEMQRLVKGEVIASTFDEPALRH
VQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKR
FFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAID
FNRSGTRKEELMTSADELQKMWILRKILHPMGETDAMEFLIDKLSMTKTNEEFFDMMKRS
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaaaaataaaccggtgtcagagcttgtcacactgggcgaaaaa
acgatgggactggagaatctagcccgtttaagaaaacaagatattattttctctattctg
aaacagcacgcaaaaagcggcgaagacatttttggtgacggtgttttagaaattctacaa
gatggttttggtttccttcgttctgccgatagttcttatttagctggtcctgatgatatc
tatgtttctccaagtcaaattcgtcgttttaacttaagaactggtgatactatttcaggc
aaaattcgcccgccaaaagaaggtgaacgttattttgcactactgaaagtcaatgaagtt
aaccacgataaacctgaagatgctcgcaataaaatcctgtttgaaaacttaacccctctc
catgcgaactcacgtctgcgtatggagcgtggtaatggttcgacagaagatttaactgcg
cgtgtactggatttagcttcaccaattggtaaaggacaacgtggtcttattgtagcaccg
ccaaaagcgggtaaaaccatgctgttacaaaatatcgctcaaagtattgcgtttaactat
ccagaatgtgagttgatggtacttctgattgacgaacgtccggaagaagtcacagagatg
caacgtttggttaaaggtgaagttatcgcatcaacatttgatgagccagcactacgtcac
gtacaagttgctgaaatggtaattgaaaaggctaaacgtttagttgagcataaaaaagac
gttatcattctactggattctatcactcgtcttgcgcgtgcttataacaccgttgtacct
gcatcaggtaaagtgttaactggtggtgtggatgctaacgccttacatcgtcctaaacgc
ttctttggtgctgcgcgtaatgtagaagaagggggtagcttaacaattatcgcaaccgca
cttgttgatacaggctcaaaaatggatgaagttatctacgaagagttcaaaggaaccggt
aatatggaacttcacctgtctcgaaaaatcgctgaaaaacgcgtattcccggctattgac
tttaaccgttctggtactcgtaaagaagagctaatgacttcagctgatgagttacaaaaa
atgtggattctgcgtaagattcttcatcctatgggtgagactgatgcgatggaattcctg
attgataaattatcaatgaccaaaactaatgaagaattctttgatatgatgaagcgttct
taa
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