Zophobihabitans entericus: IPMB12_05730
Help
Entry
IPMB12_05730 CDS
T06493
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
orb
Zophobihabitans entericus
Brite
KEGG Orthology (KO) [BR:
orb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
orb03032
]
IPMB12_05730 (topA)
03400 DNA repair and recombination proteins [BR:
orb03400
]
IPMB12_05730 (topA)
Enzymes [BR:
orb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
IPMB12_05730 (topA)
DNA replication proteins [BR:
orb03032
]
Prokaryotic type
DNA Topoisomerases
IPMB12_05730 (topA)
DNA repair and recombination proteins [BR:
orb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
IPMB12_05730 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Zn_ribbon_Top1
Toprim
CEP104_ZnF
CK_II_beta
Zn_ribbon_LysW
Motif
Other DBs
NCBI-ProteinID:
QIQ21224
UniProt:
A0A6G9IBY3
LinkDB
All DBs
Position
1270411..1273020
Genome browser
AA seq
869 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGKEFVVKSSVGHIRDLPVSGTGKRISVAKKDDKAEDKKT
KTKRSAQQALVDRMGVDPYNDWNAHYEILPGKERVVSELKKLAKDADTIYLATDLDREGE
AIAWHLKEVIGGDESKYRRVVFNEITKTAIQNAFKEPNHLDINRVNAQQARRFMDRVVGF
MLSPLLWKKVARGLSAGRVQSVAVRLVVEREREIRAFIPEEFWELHADLLTAKQPINMQV
THFKGEAYKPVNRMEIDLALELLDGVQYQVTEREDKPTKSNPGAPFITSTLQQAASTRLG
FGVKKTMLLAQRLYEAGYITYMRTDSTNLSQDAITMARGYIGKKFGDKYLPKSFNIYSSK
QNSQEAHEAIRPSDVNLSSEQIKDVEADAKKLYQLIWQQFVACQMTPAEYDSTTLTVKAG
DFLLKAKGRTLRFDGWTKVQPALRKNDEDNILPPAAVGDKLTLVELLPSQHFTKPAARYN
EASLVKELEKRGIGRPSTYATIISTIQDRGYVRLENRRFYAEKIGEIVTDRLTETFDDLM
SYDFTARMEDELDDVATKKTQWKAVLDAFFGDFNKHLEQAEKDPDAGGMRLNQLVPIPIS
CPNCSRQMGIKTASSGVFLACTGYSLPPKERCKQTINLIPEHEALNILEDTESAETNALR
ARRRCTICNTAMDTYLLDGSRKLHICGNNPICEGFEVEEGNFKVKGYEGPIVECDKCGSD
MHLKSGRFGIYMGCTNPDCKNTRKILKNGDVAPPKEDPVALPELKTTKSDAYFVLRDGAA
GIFLAANTFPKSRETRAPLVEELIRFKDRLPAKYEYLTQAPTEDPDGNKAVVRFSRKNKE
QYVTSEKNGKATSWALHYVNGKWVSTKAK
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atgggtaagtccctggtaatagtggaatcaccagcaaaagcaaaaacaattaataaatat
ttaggtaaagaatttgttgttaaatcaagtgttggacatattcgtgatctgcctgtaagc
ggaacgggtaaacgtatttctgtcgctaaaaaagatgataaagcagaagataagaaaacc
aaaacgaagcgttcagcacaacaagctcttgtcgatcgtatgggtgttgatccatataac
gactggaatgcacattatgaaatcctgccgggtaaggaacgtgttgtttcggaactgaaa
aaactggctaaagatgctgataccatttacctcgcaaccgacttggatagagaaggggaa
gcgattgcctggcatctgaaagaagtgattggtggggacgaaagcaaatatcgccgtgta
gtctttaatgagatcacgaaaactgccattcaaaatgcctttaaagaaccaaatcactta
gatattaaccgggtaaatgctcagcaggcgcgtcgatttatggaccgcgtagtgggcttt
atgctatctccactactttggaagaaagtagccagagggctatcagcgggtcgtgtgcaa
tcagttgctgtacgtcttgtggttgaacgtgaacgtgaaatccgtgcttttattccggaa
gagttctgggaacttcatgctgacttactaacggctaaacaacctatcaatatgcaggtc
actcactttaaaggtgaagcgtataaacctgttaatagaatggaaattgatttagcactt
gagttacttgatggtgtgcagtatcaggttaccgaacgtgaagataaaccaaccaaaagt
aacccgggagctccgtttattacctcaacattacagcaggcagcaagtacgcgtctgggc
tttggtgttaagaaaaccatgttactggcgcagcgcctttacgaagcaggttatattact
tatatgcgtactgactcaaccaatcttagtcaggatgcgatcaccatggctcgtggctat
attggtaaaaagtttggagataaatatttaccaaaatcatttaatatctattccagtaaa
caaaactcacaggaagctcatgaagcgattcgtccttctgatgtgaatttgtcatctgag
cagattaaagatgttgaagctgatgctaaaaagctttatcaactgatttggcaacaattt
gtggcgtgtcaaatgacgccggctgaatatgattcaacgaccttaacagttaaagcaggt
gatttcctgttaaaagctaaaggccgcacattacgttttgatggctggactaaagtgcaa
ccagcactgcgcaaaaatgatgaagataatattcttcctccggcggcagtgggtgacaaa
ctgactttagttgaattactaccaagtcaacactttactaaaccggcagcgcgttataac
gaagcttctttagttaaagaattggaaaaacgtggtattggtcgtccgtctacttatgca
acaattatttctaccattcaggatcgtggttatgttcgtttagaaaaccgtcgcttctat
gctgaaaaaattggtgaaatcgtcactgatcgtttaactgaaacattcgacgatctgatg
agttatgactttactgcgcgcatggaagatgagctggatgacgttgcgactaaaaagact
caatggaaagctgtactcgatgccttttttggtgattttaataaacatctggagcaagca
gaaaaagatcctgatgccggtggtatgcgtttaaaccaattggttcctattccaatttcg
tgtcctaactgctcacgtcaaatggggattaaaacagcaagttcaggtgtatttttagct
tgtacaggttatagcttaccgccgaaagagcgttgtaaacaaaccattaatttaatcccg
gaacatgaagcgctaaatattctggaagacactgaatcagcagaaacgaatgctctgcgt
gctcgtagacgctgtaccatttgtaatactgcgatggatacttatctgttagatggtagc
cgtaaattacatatctgtggtaataacccgatttgtgaaggctttgaagtggaagaaggt
aactttaaagtgaaaggctatgaagggccaattgtcgagtgcgataaatgtggttcggat
atgcacttaaaatcaggccgttttggtatttacatgggatgtactaatccagattgtaaa
aatacccgtaagatcttaaaaaatggtgatgtagctccaccaaaagaagatccggtagca
ctaccagaacttaaaaccactaaatcagatgcgtactttgttctgcgtgatggtgcggca
ggtattttcttagcagcgaatacattcccgaaatctcgtgagacaagagcaccactggtt
gaagagttaattcgttttaaagatcgcttgccggctaaatatgaatacttaactcaggct
ccgacagaagatccggatggtaataaagcggttgttcgttttagtcgtaagaataaagaa
caatacgtcacgtctgagaaaaacggcaaggcgactagttgggcgttacattacgttaac
ggcaaatgggtaagcactaaagcaaaataa
DBGET
integrated database retrieval system
