Zophobihabitans entericus: IPMB12_06050
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Entry
IPMB12_06050 CDS
T06493
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
orb
Zophobihabitans entericus
Pathway
orb03420
Nucleotide excision repair
orb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
orb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IPMB12_06050 (uvrD)
03430 Mismatch repair
IPMB12_06050 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
orb03400
]
IPMB12_06050 (uvrD)
Enzymes [BR:
orb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IPMB12_06050 (uvrD)
DNA repair and recombination proteins [BR:
orb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IPMB12_06050 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
IPMB12_06050 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
DUF4391
AAA_11
Motif
Other DBs
NCBI-ProteinID:
QIQ21286
UniProt:
A0A6G9IAN3
LinkDB
All DBs
Position
1349096..1351354
Genome browser
AA seq
752 aa
AA seq
DB search
MNHKLLESLNPEQQKAVTTDSQYTLVLAGAGSGKTRVLVHRIAWLCTVKNYSPNSIFAVT
FTNKAAGEMQERIEELVGAEQFAGMWVGTFHGLTHRLLRIFSDAAKLPSNFQLIDTDDQH
RLVKRIFREFQLDEKRWPTRDCAAYISTQKEKGLRPGDISPADQMEEIWKQVYTSYQAMC
DRAGYVDFSELILRAYELLTNNAEVLSYCRKRFKNILVDEFQDTNHIQYQLVKRLAGDTA
NVMIVGDDDQSIYGWRGANSDNLQTFVNHYADTEIIRLEQNYRSTGAILQTANHLISHNQ
ARLGKNLWTDQGNGEQISLYIGFNDLDEARYVIGQIKKYHQDGGNYRDCAILYRNNAQSR
LFEDTLLQSAIPYHIYGSIRFYERQEVKLALAYLRLLYDTNNDVAFEQSVNTPARGVGDS
TIDTIRNLAKQQNQSLWEVSERLIEMTVLRPKQRNGLSRFIELMNTMRKELAEKPFYEQI
DRIIQDSGIYEMYEQESGIKGQSKLENLEELVSAAHQYYESAGDNLVDVHSGKTLTVLEA
FLAYTSLEGKESSRNQDSVQLMTLHSAKGLEFEQVYIVGMEEGLFPAQRSIPDKDRMEEE
RRLAYVGITRARKHLTLSLAELRRLYGKEERNLPSRFLNELPPEWLNEVSFRGMTYSKPQ
VTQKEPVSFTFEDEESDYHYTQQDYKDKRSTKRNTTAGDDGYTLGRRVSHRRFGEGTIIN
LDGEGDHRRAQVAFVNEGIKWLVIKLANMTFL
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atgaaccataaacttctggagagccttaatccggagcagcaaaaagctgttaccacagat
agtcagtatacattggttctggcaggtgcaggaagtggtaaaactcgtgttttagttcat
cgtattgcctggctttgtactgttaaaaactactcacctaattccatttttgcggtcacg
ttcaccaataaagctgccggagagatgcaggaacgaattgaagaattggtcggtgcagag
caattcgccggtatgtgggtaggaacgttccatggtctgactcatcgtttattacgcatc
ttttctgacgcagcaaaattaccgagtaatttccagttaattgatactgacgatcagcac
cgtttggtcaaacgtatctttcgtgaatttcagttagatgaaaagcgctggccaacgcgc
gattgtgcagcttatatttctacccaaaaagagaagggactcagacccggggatatttca
cctgccgatcaaatggaagagatctggaagcaagtatataccagctatcaggctatgtgt
gatcgtgccggatatgtcgatttttcagagttaattttgcgtgcctacgaactactgacc
aataatgcagaagttcttagctattgccgtaaacgttttaaaaatattctggttgatgag
tttcaagataccaatcatatccagtatcaactggttaaacgtttagcgggtgatactgcc
aatgtgatgatcgtgggtgatgatgaccagtctatttatggctggcgcggcgcgaattca
gataatctacaaacctttgttaatcattatgctgatactgagattatccgtctggaacaa
aattaccgttcaaccggtgctattttacaaacagctaatcatttaatctctcacaatcag
gccagactgggtaaaaatttatggactgatcaaggcaatggtgagcagatttctctgtat
attggctttaatgatttagatgaagcccgttatgttattggtcaaattaaaaaatatcat
caggatggtggtaattatcgtgattgtgccatcttgtatcgtaataatgcacagtcccgt
ttatttgaagatacgttattacaatcagctattccttaccatatttatggttcgattcgc
ttctatgagcgtcaggaagttaaactggcactagcgtatttacgtctgctgtatgatacc
aataacgatgtggcttttgagcaatcagtcaatacaccagccagaggtgtgggggattca
acgattgatactattcgtaatctggcaaaacagcaaaatcagtctttatgggaagtgtct
gaacgacttattgagatgacggttctcagacctaagcagcgcaatggactttcgcgtttt
attgagctaatgaataccatgcgtaaagagctggcagaaaaaccattctatgagcagatt
gaccgaattattcaggattccggtatttatgaaatgtatgagcaggagagtggcattaaa
ggtcaatccaagcttgaaaatctggaagaactggtttcagctgcacatcaatattatgag
tcagccggagataatctggttgatgttcatagcggcaaaaccttaactgtactggaagca
tttctggcttatacttcactggaaggtaaagagagctcacgtaatcaggattcagtgcaa
ctgatgactttgcattccgctaaagggctggagtttgagcaagtttatattgtcggaatg
gaagaggggctgttccctgctcagcgatctattcctgataaagaccgtatggaagaggaa
cgccgcttagcttatgtgggtatcaccagggcgcgtaaacacctaacgttgtctttagct
gaactcagacgcttatatggtaaggaagagcgtaatttaccttcgcgcttcttaaatgaa
ttaccaccagagtggctgaatgaagttagttttagagggatgacctatagtaaaccccag
gttactcaaaaagagccggtttcttttacttttgaagatgaagaaagtgattatcactac
actcaacaagactataaagataaacgttcaactaagcgtaatacaacagccggtgatgac
ggatataccttaggacgacgtgtaagtcaccgtcgttttggtgaaggaactattattaat
ttagatggtgagggcgatcatcgtcgcgctcaggttgctttcgtgaacgaaggcataaaa
tggttagtgattaaactggcaaatatgacatttttgtaa
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integrated database retrieval system
