Entry |
|
Symbol |
srmB
|
Name |
(GenBank) ATP-dependent RNA helicase SrmB
|
KO |
|
Organism |
orb Zophobihabitans entericus
|
Brite |
KEGG Orthology (KO) [BR:orb00001]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:orb03009]
IPMB12_06470 (srmB)
Enzymes [BR:orb01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IPMB12_06470 (srmB)
Ribosome biogenesis [BR:orb03009]
Prokaryotic type
rRNA helicases
IPMB12_06470 (srmB)
|
SSDB |
|
Motif |
|
Other DBs |
|
LinkDB |
|
Position |
complement(1437526..1438842)
|
AA seq |
438 aa
MSEITDFSSLELDESLLNALEDKGFKKPTVIQAQTIPVALDAKDIMGSAPTGTGKTLAFL
IPAIQHLLDFPRRKPGPPRILILAPTRELAMQIADEAKEMAKYTNLSIATITGGVAYMNH
AEVFSKNQDIVIATTGRLLQYIKEENFDCRAVEMLILDEADRMLDMGFAKDVETIAAETR
WRKQTLLFSATMEGEGLYDFAKRILNEPVEINSDPSRRERKKIQQFYYRADDLEHKTALL
VHLLKQPDCKKAVVFVRKRERLHELVSWLHQAGILSSYLEGEMVQAKRSEAIKRLQNDKT
KVLVATDVAARGIDINDITHVINYDLPRTADIYLHRIGRTARAGKKGIAISLVEAHDNDL
LQKIERYIQEPIKLRVIEELKPKSKAPKAVTKKKPSKKAKEKKANKKEEQKKVKVRHRDS
KNVGKRRKPASTTETVNS |
NT seq |
1317 nt +upstreamnt +downstreamnt
atgtctgaaatcactgacttttcatcacttgaactggatgaatcattacttaatgctctg
gaagataaagggtttaaaaaaccaaccgttatccaggcacaaactattcctgttgcgctt
gatgctaaagatattatgggctccgccccaacaggtaccggcaaaactctggcattttta
attccggcgattcagcatttacttgattttccgcgtcgtaaaccaggtcctccgcgtatt
ttgattcttgccccaacccgtgagctggcaatgcaaattgctgacgaagcgaaagaaatg
gccaagtacaccaacttaagtattgcaactattactggtggcgtggcttatatgaatcac
gcagaagtattcagtaaaaatcaggatatcgttattgctacaactggccgactcttacaa
tacataaaagaagagaactttgactgccgtgcagtagaaatgttgattttagacgaagct
gaccgtatgttggacatgggatttgccaaagacgtcgaaaccattgctgcagaaacccgt
tggcgtaaacaaactctgctcttttctgccaccatggaaggcgaaggcttgtatgatttt
gctaaacgtattttaaatgagccggttgaaatcaactcagatccttctcgtcgcgagcgt
aaaaagatccagcaattctattaccgtgctgatgaccttgaacacaaaactgccctgctc
gtccatttactaaaacaacctgattgtaaaaaagccgttgtctttgtacgcaaacgggag
cgtctacatgagctggtgagctggttacatcaggctggtatcttaagtagttatcttgaa
ggtgaaatggttcaggctaagcgcagtgaagcaattaaacgtctgcaaaatgataaaacc
aaagtgttggttgccaccgatgttgctgcgcgcggtattgatatcaatgatattactcac
gtaatcaactatgatttaccaagaacagctgatatttacctgcaccgtattggcagaaca
gccagagcgggcaaaaaagggattgcaatatctctggttgaagcccatgataatgactta
ctacaaaagatcgaacgctatattcaagaaccaattaagttaagagtgattgaagaatta
aagccaaaatctaaagcgccaaaagcggtcactaaaaagaaaccgtctaaaaaagcgaaa
gagaaaaaggccaataaaaaagaagaacagaagaaagtcaaagttcgtcatagagacagt
aaaaatgtaggaaaacgcagaaagccagctagcacaacggaaaccgttaatagttag |