Zophobihabitans entericus: IPMB12_06470
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Entry
IPMB12_06470 CDS
T06493
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
orb
Zophobihabitans entericus
Brite
KEGG Orthology (KO) [BR:
orb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
orb03009
]
IPMB12_06470 (srmB)
Enzymes [BR:
orb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IPMB12_06470 (srmB)
Ribosome biogenesis [BR:
orb03009
]
Prokaryotic type
rRNA helicases
IPMB12_06470 (srmB)
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Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
PhoH
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QIQ21363
UniProt:
A0A6G9IAX1
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All DBs
Position
complement(1437526..1438842)
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AA seq
438 aa
AA seq
DB search
MSEITDFSSLELDESLLNALEDKGFKKPTVIQAQTIPVALDAKDIMGSAPTGTGKTLAFL
IPAIQHLLDFPRRKPGPPRILILAPTRELAMQIADEAKEMAKYTNLSIATITGGVAYMNH
AEVFSKNQDIVIATTGRLLQYIKEENFDCRAVEMLILDEADRMLDMGFAKDVETIAAETR
WRKQTLLFSATMEGEGLYDFAKRILNEPVEINSDPSRRERKKIQQFYYRADDLEHKTALL
VHLLKQPDCKKAVVFVRKRERLHELVSWLHQAGILSSYLEGEMVQAKRSEAIKRLQNDKT
KVLVATDVAARGIDINDITHVINYDLPRTADIYLHRIGRTARAGKKGIAISLVEAHDNDL
LQKIERYIQEPIKLRVIEELKPKSKAPKAVTKKKPSKKAKEKKANKKEEQKKVKVRHRDS
KNVGKRRKPASTTETVNS
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaatcactgacttttcatcacttgaactggatgaatcattacttaatgctctg
gaagataaagggtttaaaaaaccaaccgttatccaggcacaaactattcctgttgcgctt
gatgctaaagatattatgggctccgccccaacaggtaccggcaaaactctggcattttta
attccggcgattcagcatttacttgattttccgcgtcgtaaaccaggtcctccgcgtatt
ttgattcttgccccaacccgtgagctggcaatgcaaattgctgacgaagcgaaagaaatg
gccaagtacaccaacttaagtattgcaactattactggtggcgtggcttatatgaatcac
gcagaagtattcagtaaaaatcaggatatcgttattgctacaactggccgactcttacaa
tacataaaagaagagaactttgactgccgtgcagtagaaatgttgattttagacgaagct
gaccgtatgttggacatgggatttgccaaagacgtcgaaaccattgctgcagaaacccgt
tggcgtaaacaaactctgctcttttctgccaccatggaaggcgaaggcttgtatgatttt
gctaaacgtattttaaatgagccggttgaaatcaactcagatccttctcgtcgcgagcgt
aaaaagatccagcaattctattaccgtgctgatgaccttgaacacaaaactgccctgctc
gtccatttactaaaacaacctgattgtaaaaaagccgttgtctttgtacgcaaacgggag
cgtctacatgagctggtgagctggttacatcaggctggtatcttaagtagttatcttgaa
ggtgaaatggttcaggctaagcgcagtgaagcaattaaacgtctgcaaaatgataaaacc
aaagtgttggttgccaccgatgttgctgcgcgcggtattgatatcaatgatattactcac
gtaatcaactatgatttaccaagaacagctgatatttacctgcaccgtattggcagaaca
gccagagcgggcaaaaaagggattgcaatatctctggttgaagcccatgataatgactta
ctacaaaagatcgaacgctatattcaagaaccaattaagttaagagtgattgaagaatta
aagccaaaatctaaagcgccaaaagcggtcactaaaaagaaaccgtctaaaaaagcgaaa
gagaaaaaggccaataaaaaagaagaacagaagaaagtcaaagttcgtcatagagacagt
aaaaatgtaggaaaacgcagaaagccagctagcacaacggaaaccgttaatagttag
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