Zophobihabitans entericus: IPMB12_07295
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Entry
IPMB12_07295 CDS
T06493
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
orb
Zophobihabitans entericus
Pathway
orb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
orb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IPMB12_07295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
orb03019
]
IPMB12_07295
03009 Ribosome biogenesis [BR:
orb03009
]
IPMB12_07295
Enzymes [BR:
orb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IPMB12_07295
Messenger RNA biogenesis [BR:
orb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IPMB12_07295
Ribosome biogenesis [BR:
orb03009
]
Prokaryotic type
rRNA helicases
IPMB12_07295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Zeta_toxin
tRNA-synt_1b
Cas3-like_C_2
Geminin
Motif
Other DBs
NCBI-ProteinID:
QIQ21503
UniProt:
A0A6G9IBA3
LinkDB
All DBs
Position
1589212..1591083
Genome browser
AA seq
623 aa
AA seq
DB search
MTNEVSFVDLGLPESILNALNDLGFTKPSPIQAQCIPLLLSGEDVLGMAQTGSGKTAAFS
LPFLSKIDANLKAPQLLVLAPTRELAIQVADACTDYAKYMNGIKVLPLYGGARYDGQLRA
LKQGAQIIVGTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIDDVESIMDAIPEGH
QTALFSATMPAPIRRITKRFMKNPKEIQIAATMQTKPDISQSFWLVRGLRKNEALVRFLE
VEDFDAAIIFVRTKTATLDVAEVLEKHGYNCAALNGDMTQVLREQTLDRLRNGRLDILIA
TDVAARGLDVERISLVVNYDIPLDSESYVHRIGRTGRAGRAGRALLFVDSRERRLLRNVE
NVMKMAIPEVGLPSKELMEERRLARFAEQVQKQLDSKDLEQYREILMKLKQDDTELENLA
AALLKMAQGNRSLILPPDPVVKPMRETRGDRNDRGDRNSRDDRGGRLRGDDREAPKRRER
RDVGDMDLYRIEVGREDGIDVRHIVGAIANEGDISSRYIGNIKLYDNYSTVELPKGMPKD
LLTHFERVRVLNIPMNMSMLGDAPAAPAKGKRDSGGGKGGRDFAPKGRGSRSDSGDSAPR
RKPRASSDSEGGAPKGRGRPRSK
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgacaaacgaagtttcttttgttgatttaggtttacctgaatctattcttaatgccttg
aacgatctgggctttacaaaaccatcacctattcaggcgcagtgtattccactattgcta
tcaggtgaagatgtgcttgggatggcacaaaccggtagtggtaaaacagctgcatttagc
ttaccttttttaagcaaaatagatgctaatttaaaagcaccacaacttttagttttagcg
ccgacgcgtgagctggcgattcaggttgctgatgcgtgtactgattacgctaaatatatg
aatggaatcaaagtattaccattatatggtggtgcacgttatgatggtcagttacgtgct
ttaaaacaaggtgcacaaattattgttggtacaccgggccgtttacttgaccacttaaaa
cgcggtactttagacctgtctaatttaaaaggtttagtccttgatgaagctgacgaaatg
ttgcgtatgggctttattgatgacgtggaaagtattatggatgctattcctgaaggtcat
caaacagcactattctctgcaacaatgccggcaccaattcgtcgtattactaaacgtttt
atgaagaatccaaaagagattcaaattgcagcaacaatgcaaaccaaaccggatattagt
caaagcttctggctggtgcgtggactacgtaaaaatgaagcattagtccgtttccttgaa
gtagaagattttgatgcagcgattatctttgtaagaaccaaaacagcaacacttgatgtc
gctgaagtgctggaaaaacatggttataactgtgcggcactaaatggtgatatgacacag
gttctgcgcgagcaaacacttgatcgtttaagaaatggtcgtttagatatcctaattgca
actgatgttgcagcgcgtggtcttgacgttgaacgtattagtttagtggttaactatgat
attccactagattcagaatcttacgtgcaccgtattggtcgtactggtcgtgctggtcgt
gctggtcgggcattactatttgttgatagccgtgagcgtcgtttactgcgtaatgttgaa
aatgtaatgaaaatggcaattcctgaagttggcttaccatctaaagagctaatggaagaa
cgtcgtttagcgcgttttgcagaacaagtacaaaaacaattagatagtaaagatttagag
caataccgtgaaattttaatgaagttaaaacaggatgacactgaacttgagaacttagct
gctgctttattaaaaatggcacaaggtaaccgttcgttgattcttcctcctgatccggta
gttaagccaatgcgtgaaactcgcggtgatcgtaatgatcgtggcgacagaaatagccgt
gatgatcgtggtggtcgtctgcgtggtgatgatcgtgaagcaccaaaacgtcgtgagcgt
cgtgatgtaggtgatatggatctgtatcgtattgaagtaggccgtgaagatggtattgat
gttcgtcatatcgttggtgcgatcgctaatgaaggcgatatcagcagccgttatatcggt
aatatcaaattatatgataactactcgacggttgagctgccaaaaggtatgccaaaagat
ttactgactcattttgaacgtgtccgtgtactgaatattccgatgaatatgagtatgctt
ggcgatgcgcctgctgcaccggcaaaaggtaaacgtgattctggtggcggtaaaggcgga
cgtgattttgcaccaaaaggccgtggtagccgttctgatagcggtgacagcgcaccaaga
agaaaaccacgtgcttcttctgatagtgaaggcggggcaccaaaaggtcgtggtcgtcca
cgttctaaataa
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