Zophobihabitans entericus: IPMB12_08175
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Entry
IPMB12_08175 CDS
T06493
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
orb
Zophobihabitans entericus
Pathway
orb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
orb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IPMB12_08175 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
orb03019
]
IPMB12_08175 (pcnB)
Enzymes [BR:
orb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
IPMB12_08175 (pcnB)
Messenger RNA biogenesis [BR:
orb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
IPMB12_08175 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol
PolyA_pol_arg_C
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
QIQ22450
UniProt:
A0A6G9IFR5
LinkDB
All DBs
Position
complement(1790113..1791552)
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AA seq
479 aa
AA seq
DB search
MFRKVSRFYRKLFQSEVPTELPVEVQHSEQEQPLGNVVIVPREQHNISRQLISENALKVL
NRLNKQGYEAYLVGGCVRDLLLGQTPKDFDVTTNATPEQVQKVFRNCRLVGRRFRLAHIM
FGKEIIEVATFRGDHEDASNDSHESRQSNTGMLLRDNVYGTIEQDAVRRDFTINSLYYCS
KDFTVRDYCGGLQDLRQGVIRLIGEPETRYREDPVRMLRAVRFAAKLNMTLAPETAKPIV
RLAPLLQNIPAPRIFDESLKLLQSGYGYSTYQLLREYHLFDQLFPVISRLFTPKTTTHKA
MPDNYMEQILEQVLKNTDYRIKNDQRVNPAFLFAVFLWYPLTELTQKLVMESGLPYHEAF
SMAVNDLLHEQSKTIAIPRRLTIIMNDIWRLQARMTKRFGKRAYVLLEHPKFRAAYDLLE
LRSSIEKGELLTLAKWWDEFQHADHDEQEAMVKMLDKEPTRRKHSPRKSHKPTKDKAKQ
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
attttcagaaaagtttcgcgcttttaccgcaaattgtttcaatctgaagtacctactgaa
ttacctgtcgaagttcaacattcagagcaagaacaacctttagggaatgtggttattgtt
ccccgggaacagcataatatttcacgtcaattaattagtgaaaatgcgttaaaagtgctt
aatcgtcttaacaaacaaggttacgaagcttaccttgtaggtggttgcgtccgtgattta
ctgctgggacaaacaccaaaagactttgatgtcaccacaaatgctacaccggagcaggtt
caaaaagtattccgtaactgccgtctggtcggacgtcgctttagacttgcacacattatg
tttggtaaagaaattattgaagttgcaacatttcgtggcgatcatgaagatgccagtaat
gactctcatgaatcacgtcagtcaaatactggtatgttactcagagacaacgtatatggc
actatagagcaagatgctgtaagacgcgacttcaccattaacagcctttattattgtagt
aaagatttcactgttcgcgattattgtggtggtttacaggatttgcgtcagggtgttata
cgtttaattggagagccggaaactcgctaccgcgaagatcctgtgcgaatgcttagagca
gtcagattcgctgctaaattaaatatgactttagcaccagaaacggccaagccgatcgtt
cgcttagcgccgttattacaaaatattccggcaccacgtatttttgatgaatcattaaaa
ttactgcaatccggttatggctatagtacttatcaattacttcgtgagtatcatctgttt
gatcaactcttcccggttatcagtcgtctgtttacaccaaaaacgacaacgcataaagca
atgcctgataactatatggaacagatcctcgaacaagtcctcaagaatacagattaccgt
atcaaaaatgatcagcgcgtaaatccggcatttctatttgctgtgttcttatggtatcca
ttaacagagctgacccagaaactggtgatggaaagtggcctgccttatcatgaggcgttc
tctatggcggttaatgacttgttacatgaacaaagtaaaaccatcgctataccacgccgt
ttaacaattatcatgaatgatatctggcgcctgcaagctcgtatgaccaaacgttttggc
aaacgagcttatgtgttacttgaacatcctaaattccgtgcggcttatgatttgttagaa
cttcgctcttctattgagaaaggtgaactattgactttagccaaatggtgggatgaattc
cagcacgctgatcatgacgagcaagaagcgatggttaaaatgctggataaagagccaacg
cgtcgtaaacatagtccacgtaaatctcataaaccaactaaggataaagctaagcagtaa
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