Zophobihabitans entericus: IPMB12_09415
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Entry
IPMB12_09415 CDS
T06493
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
orb
Zophobihabitans entericus
Brite
KEGG Orthology (KO) [BR:
orb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
orb03016
]
IPMB12_09415
Enzymes [BR:
orb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
IPMB12_09415
Transfer RNA biogenesis [BR:
orb03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
IPMB12_09415
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
Rho_RNA_bind
AAA_9
ProQ_C
Motif
Other DBs
NCBI-ProteinID:
QIQ21879
UniProt:
A0A6G9IDI8
LinkDB
All DBs
Position
complement(2064302..2066254)
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AA seq
650 aa
AA seq
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MFQNNPLLAQLKQQLHKETPRIEGTVRAHEKGYGFLELDNNKKSYYIPNTQMRKLVHGDR
VSGILQQQDGKEQFEPESLIETPLVRFIARVAFENNHLVLHADHLMTRNTIRGKVMPSVK
QRLEAGDWVIAELKEHPLKKDGKHFSAEVTEFITHKNNKLALWLITLTRHNLETETPEDV
QLELLAGEEKNRQDLTNEPFFTIDSADTYDMDDALKISLDEHGNYLLSVAIADPTAYIAE
NSPLDNVAKHRIFTTYLPNYHVSMLPQNVANDLCSLKAKAKRPAIVCNVMISPQGQILKD
ATFTLAWIESKAKLAYHLVSDYLENKGDWQPDNEQIKQQFPLLVQMANARIQWRNHNAIL
FQDQSDYRFILDEQNQVQSIVKEERRTANKIVEEAMIAANKALATQLENTLGFGVFSAHI
GFDPKYLETVHKILVDNQITQFDKEALASFDGYIQLKRLTQNNSFLDARLRRYLAPADFT
FQPRPHFGLGFKLYTTWTSPIRKYSDMLNHHLIKAMIRQQQFVKPEESILEKMVERRKQM
RGAERDLSNYLYAQYLLNKIDEPFAAEIVDINKGGIKVKLTEIGAMAFMPASLIHPVKED
VTISPDEGLLKIKDQTTYRIADRLTVQISEVKPEYQAVIAKPASALNQAK
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaaaataatccactacttgctcaacttaaacaacagttacacaaagaaacccct
cgtatcgaaggtaccgtacgcgctcatgaaaaaggctatggttttcttgaattagataac
aataaaaaaagttattatattcctaatacacaaatgcgtaagctggtccacggcgatcgt
gtttcagggattttgcaacagcaagatggaaaggaacaatttgaaccagaatcattaatt
gaaactccgttagttcgttttattgctcgtgtggcatttgaaaataatcacctcgtttta
catgctgatcatctgatgaccagaaatacgattcgaggcaaggtcatgccatcagtaaaa
caacgtcttgaggctggtgactgggttattgctgaattaaaggaacacccgctgaaaaaa
gatggtaaacatttctctgctgaagtgactgaatttattactcataaaaataataaactg
gcattgtggcttatcaccttaactcgtcataatttagagaccgaaacacctgaagatgta
caattagaactccttgccggtgaagagaaaaatcgtcaggacttaaccaatgagccgttc
ttcactatagatagtgctgacacctatgatatggatgacgccttaaaaattagtctggat
gagcatggtaactatctattatctgtcgctatcgctgacccaacagcttatatcgctgaa
aatagccctctggataacgttgctaaacaccgtatcttcaccacttatttgcctaattat
catgtgtcgatgttaccacaaaatgtcgctaacgacctttgttctttaaaagcaaaagct
aagcgcccggcaattgtctgtaacgtgatgattagtcctcaagggcagattctaaaagat
gctacatttacactcgcctggatcgagtcaaaagccaaacttgcttaccatttagtctct
gactatttggaaaacaaaggtgactggcaaccagataacgagcaaattaagcaacaattc
ccccttttagtacaaatggctaatgcccgtattcagtggcgtaatcataatgctattttg
tttcaggaccaaagtgattatcgctttattctggatgagcaaaatcaggtacaaagtatt
gtcaaagaagagcgtcgcaccgcaaataaaattgttgaagaggcgatgattgcagccaat
aaggcactagcgacacaactagaaaacacattgggatttggtgtatttagtgctcatatc
ggttttgatccgaaatatctggaaacggttcacaaaatactggttgataaccaaatcact
caatttgataaagaagccctggcctcatttgatggctatatacaactgaagagattaacg
caaaataattcttttttagatgcccgattacgtcgttacctggccccggctgatttcacc
ttccagccaagaccacattttggtttaggctttaagctttataccacctggacatcaccg
attcgtaaatatagcgatatgctcaatcatcacctgattaaagctatgatccgtcaacaa
caatttgttaagccagaagagtccattttagaaaaaatggtcgaaaggcgtaaacagatg
cgtggtgctgaacgtgatctctctaattatctctacgcacagtatctgctaaataaaatt
gatgaaccatttgcagctgaaattgtcgatatcaataaaggtggtattaaagtaaaacta
actgaaattggcgcgatggcatttatgccagcttcacttatccatccggttaaagaagat
gtgactatttcccctgatgaaggtttgctaaaaattaaagatcagacaacttatcgtatt
gctgatcgtctgacggtgcaaattagtgaagtaaaaccagaatatcaggctgtgattgca
aaaccggcctctgccttgaaccaagccaaataa
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