Zophobihabitans entericus: IPMB12_10050
Help
Entry
IPMB12_10050 CDS
T06493
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
orb
Zophobihabitans entericus
Pathway
orb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
orb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IPMB12_10050 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
orb03019
]
IPMB12_10050 (rhlE)
Enzymes [BR:
orb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IPMB12_10050 (rhlE)
Messenger RNA biogenesis [BR:
orb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IPMB12_10050 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
HI1480
CMS1
Motif
Other DBs
NCBI-ProteinID:
QIQ21995
UniProt:
A0A6G9ICN7
LinkDB
All DBs
Position
complement(2204000..2205331)
Genome browser
AA seq
443 aa
AA seq
DB search
MSFSSLGLSTEILQAVQELGYSTPTPIQQQAIPVVLSGKDLMASAQTGTGKTAGFVLPIL
QQIQNTQPKAPANDQAKRSKRQLKALILAPTRELAAQIGENVREYSKYLPVRSLVVFGGV
SINPQMMKLRGGVDILVATPGRLLDLVQQNAVDLSQIKTFVLDEADRMLDMGFIHDIRRV
IAKLPKKRQNLLFSATFSDEIKELAGTFLNSPAQVEVARPNSASEQIVQFIHHVDKKRKR
ELLSYLIGSQQWRQVLVFMRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTKALADFKS
GNITVLVATDIAARGIDIDQLPYVVNYELPQVAEDYVHRIGRTGRAQHQGQAVSLVCVDE
LQLLKDIEKLLKTSLPRMQTEGFEPDPKIKAEPIQKPKQSAPKRNSFSSKPARTGRSAQP
NKAKSENKNRSDNPWKNSKPKSN
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgtcattttcctcactcggtttaagtactgagattttacaagcggtacaagaactgggt
tattccactcctacaccaattcaacaacaagcaattccggtagtactttccggtaaagat
ttaatggccagtgctcaaacaggaacaggaaaaacagctggttttgtattacctattttg
caacaaatacaaaatacacaacctaaagcccctgcaaatgatcaggctaagcgtagcaaa
cgccagttaaaagcacttattctggctccaaccagagaacttgcagctcaaattggtgaa
aacgtacgtgaatatagcaaatatttaccggttcgctctttagtcgtttttggtggtgta
agtattaatcctcaaatgatgaagctacgtggtggcgttgatatcttagttgcaacacca
ggacgactgcttgatttagtacagcaaaatgccgtagatcttagccagattaaaactttt
gtacttgatgaagctgacagaatgctggatatgggctttattcacgatattcgccgggtt
attgctaagttacctaaaaaacgtcaaaacttactgttttctgcgactttttctgatgaa
atcaaagaactagccggcacatttttaaattcacctgcccaggttgaagtggctcgccct
aatagtgcttctgaacaaattgtgcaatttattcatcatgttgataaaaaacgtaaacgt
gaattactctcttatttaattggttctcagcagtggcgacaagttttagtatttatgcga
actaaacatggtgcaaatcatttagcggaacaactcaataaagatggtatcaccgcggct
gcgattcatggtaataaaagccagggagcaagaacaaaagccttagccgattttaaaagc
ggcaacattacagtactcgttgctaccgatatcgctgcacgtggtattgatattgaccag
ctaccttatgttgtaaactatgaattaccacaagttgcagaagattatgtacatcgaatc
gggcgtactggtcgtgctcaacatcaggggcaagccgtttctctggtttgtgttgatgaa
ttacagcttttaaaagatattgagaaattactcaaaacctctttacctcgtatgcagacc
gagggttttgaaccagatccaaaaattaaagcggagcctattcaaaaaccaaaacagtca
gcgccaaaacgtaacagcttttcaagtaaaccagccagaactggccgctctgctcagcca
aataaagcaaaatctgaaaataaaaacagatctgataatccatggaaaaacagtaaacca
aagagtaactaa
DBGET
integrated database retrieval system
