Zophobihabitans entericus: IPMB12_10585
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Entry
IPMB12_10585 CDS
T06493
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
orb
Zophobihabitans entericus
Brite
KEGG Orthology (KO) [BR:
orb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
orb03019
]
IPMB12_10585 (hrpA)
Enzymes [BR:
orb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
IPMB12_10585 (hrpA)
Messenger RNA biogenesis [BR:
orb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
IPMB12_10585 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
nSTAND3
HA2_N
SLFN-g3_helicase
NACHT
PhoH
ABC_tran
EntA_Immun
AAA_23
T2SSE
AAA_30
TsaE
ResIII
AAA_16
NTPase_1
Zeta_toxin
AAA_11
Sas-5-like_implico
Motif
Other DBs
NCBI-ProteinID:
QIQ22093
UniProt:
A0A6G9ICZ5
LinkDB
All DBs
Position
complement(2330981..2334868)
Genome browser
AA seq
1295 aa
AA seq
DB search
MSQQQLKHLFNQLDKVCLSDKLKLSRQLLSLKKQGTITPEALSQVEQKVIDALSRYQQKK
LSCPAIVYPDNLPVAEKKQAIYEAIRDNQVVIIAGETGSGKTTQIPKICLELGRGIAGYI
GHTQPRRLAARSVASRIAEELKTEIGSAVGYKVRFSDQVSENTLIKLMTDGILLAEIQQD
RLLMQYDTIIIDEAHERSLNIDFILGYLKQILPKRPDLKVIITSATIDPERFSKHFNNAP
MIEVSGRTYPVEVRYRPLTDNSEDEGDQLQGIIQAIDELSYETKGDILIFLTGEREIRDV
ADALNRLNLLHTEVLPLYARLSAAEQNRIFQSHAGRRIILATNVAETSLTVPGIKYVIDP
GLARISRYSFRTKVQRLPIEPISQASANQRKGRCGRTSDGICIRLYDEQDFLSRDEFTAP
EILRTNLASVILQMTSLGLGDIAAFPFVEAPDKRNIQDGIRLLEELGAIYQKQSQYHLTQ
IGQTLAQLPIDPRLARMVVEARKQGCIKEIMIITAALSIQDPRERPLEKQQASDEKHRRF
LDKESDFVTFVNLWNYIKEQQEALSASQFRKLCKQDYLNYLRVREWQDVYTQLRQVIKEL
KFPVNSVAADYRAIHCSLLSGLLSHIGLKDLEKHEYTGARNIKFSIFPNSGLFKKPPKWC
VVAELVETSKLWGRIAAQIDPEWIEPLAEHLIKHSYSEPHWAKSQGTTLANEKVTLFGLP
IVNQRSVNYAPIDPIISRELFIRHALVEGDWQTKHAFFQKNRQLMDDVEDLEHKSRRRDI
LVDDEVLYQFYDKRLPVDIVSARHFDNWWKKTERSQPDLLNFEKSMLIKESAGKVSQLDY
PDSWQQNNLKLPLSYQFEPGNEADGVTVHIPVAVLNQVSEQGFDWQIPGLRQELIIALIK
SLPKPIRRHFVPAPNYAEAFLSRAEPLGMPLLESLECEFRRMSGVTIDREMWQWDQIPDH
LKMTFRVLDQNDRKLQESKDLQSLKTDLKDKVQQTLSKTTKSEQIEKRNITEWDFGQLPK
SYESKRGQYTIKAYPALVDDNQSVSIKLVDSESEQQRLALIGLRRLLLLNIPSPVKYLHE
KLPNKAKLGLYFNTFGSVLDLIDDCIICGIEQLIKSHGGLVWNNEEFEQLLSYVKGHINE
SVVEIAKQVEKILTLNFNINKKLKGRFDLNMAFAMSDIKAQLSNLIYKGFVTQTGATRLN
DLYRYLTAIEKRLEKMLLDPNKDRAHMLKIEQVQTAYQQLLKKLPADRQQDTTITDIRWM
IEELRVNFFAQQLGTPYPISEKRIFQQIDNIAKNG
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
atgtcacagcaacaattaaagcacctatttaatcaattggataaagtttgtcttagcgat
aaactcaaattgagtcgtcaactgttatcactgaaaaagcaggggactataacgcctgaa
gctttatcacaagtagaacaaaaagtgattgacgcactgtctcgttatcaacaaaaaaaa
ttatcctgtccggctattgtctatcctgacaatttacctgtagcagaaaagaaacaagct
atttatgaagcgattcgcgataaccaggttgttattattgctggtgaaacaggttctggt
aaaacgactcagattcctaaaatctgtttagaacttggcagaggcatcgccggttatatt
ggtcatactcaaccaaggcgtctggcagcgagatcagtagccagtcgtattgcagaagaa
ttaaagactgaaataggttcagctgttggttataaagttcgttttagtgatcaggtgagt
gaaaataccttaattaaactcatgactgacggtatcttgctggcagaaattcagcaagat
cgactgctaatgcaatatgacacaattattatcgatgaagcccatgaacgtagccttaat
atcgattttattctgggatatttaaagcagatcctgccaaaacgtccagatctaaaagtg
atcattacttcagcgaccattgatcctgaacgtttctcaaaacattttaataatgcaccg
atgatcgaagtttctggtcgaacttatccagtagaagtgcgttatcgtcctttaactgac
aatagtgaagacgaaggagatcaattacagggcatcattcaggcaattgatgagctctcg
tatgagactaaaggtgatattctaatcttcttaactggcgagcgggaaattcgtgatgtg
gctgatgcgttaaatcgcttaaatttattacatactgaagtattacctttatatgcacgt
ctatcagccgcagaacaaaatcgaattttccagtctcatgctggacgacgaattattctg
gcaaccaatgttgcagaaacgtcactgactgttcctggtattaaatatgtgattgatccg
ggactagccagaattagccgttatagttttcgtaccaaagttcagcgtttacctattgag
ccaatttctcaggcatcagctaatcagcgtaaaggtcgctgtgggcggacatctgatggt
atttgtattcgtctttatgatgaacaagattttctctcgcgtgatgaatttactgcgcca
gaaattttaagaaccaatctggcctctgttattttacagatgacctcactcggacttggt
gatattgctgcgtttccttttgttgaagcgccggataaacgtaatattcaggatggtatt
cgtttattggaagaacttggtgctatctaccaaaaacaaagccagtatcatttgactcaa
attggtcaaactttggcacagttgccgatagatcctcgtctggccagaatggtagtagaa
gccagaaagcagggctgtattaaagaaattatgatcatcactgccgctttatctattcag
gatccaagagaacgtcctttagaaaaacaacaggcttccgatgaaaaacatcgtcgtttt
ttagataaagagtctgattttgtcacttttgttaatctctggaattatattaaggagcaa
caagaagcattatcagccagtcagttccgtaaattatgtaagcaggactatctgaactat
ttacgcgtcagagagtggcaagatgtttatacccagctaagacaagtgattaaagaactt
aaatttccggtaaatagtgttgctgctgattatcgggcaatccactgctctttacttagt
ggacttttatctcatattggtctgaaagatttagaaaagcatgaatataccggtgcacgt
aatattaaattctctattttcccaaattcagggttatttaaaaaaccacctaaatggtgt
gtggttgctgaactggtagaaacctcaaaactttgggggcgcatcgctgcacagattgat
cctgaatggattgaaccactcgctgagcacttaattaaacatagttatagtgaacctcat
tgggctaaatcgcagggcactacgctggcaaacgagaaagtcacactatttggcttacct
attgtgaatcaacgttcggttaattatgcaccaatagatcccattattagccgtgaactc
tttattcgtcatgctttggttgaaggtgactggcaaactaaacatgctttcttccagaaa
aatcgtcagttaatggatgatgttgaagatctagaacataaatccagacgccgggatatt
ttagttgatgatgaggttttatatcagttttatgataaacgtctacctgtggatattgta
tctgccagacactttgataactggtggaaaaagacagaaagatcacaacctgatttatta
aactttgaaaaaagtatgttaattaaggaatcagcaggtaaggtaagtcagctagattat
ccagactcttggcagcaaaataacttaaaattaccgttatcttatcagttcgaaccgggt
aatgaggctgatggtgtaacagttcatattccagttgcagtgttaaatcaggttagtgaa
caaggttttgactggcaaattccggggcttagacaagaattaattatcgctttaattaaa
tctttgccaaaaccaataaggcgtcattttgtcccagctcctaattatgctgaagcattt
ttatcccgggcagagccactcggtatgccattacttgaatctttagagtgtgagtttcga
cgaatgagtggtgtcacaatcgatcgggaaatgtggcaatgggatcagattccggatcat
cttaaaatgacttttagagtgttggatcaaaacgatcgtaaactacaggaaagtaaagat
ctgcaatctttaaaaactgatctaaaagataaagttcagcaaacactttctaaaacgaca
aaaagtgaacaaattgagaagcggaatattacagaatgggactttggccagttaccaaaa
tcttatgaaagtaagcgtggtcaatataccattaaagcttatccggcgttagttgatgat
aatcaaagtgtaagtatcaaactggttgattcagagtcagaacagcaacgcttagcgtta
atcggattacgccgtttactgttattaaatattccatcaccagtgaaatatctacatgaa
aagttaccaaataaagctaaactaggcctatattttaatacttttggctctgttttagat
ctgattgatgattgtattatttgtggtattgaacaactgattaaatctcatgggggttta
gtctggaataatgaagagtttgaacagctgttgtcttatgtcaaaggacatattaatgaa
tcagtggtagagatagctaaacaagtcgagaagattctgactctgaattttaacattaat
aaaaagctaaaaggacgatttgatctaaatatggcttttgctatgtcagatataaaagcg
caattatccaatctgatctataaaggttttgtcactcaaactggagcaacaaggcttaat
gatctgtatcgttatttaacagcgattgaaaagcgtctggagaaaatgttacttgatcca
aacaaggacagggcacatatgctgaaaattgagcaggttcagactgcttatcagcagtta
ttgaaaaaactacctgctgacagacaacaagatacgacaataacagatattcgctggatg
atagaagagcttagagttaacttttttgcccagcagcttggaacgccatacccaatttcg
gaaaaacgtatttttcaacagattgataatattgctaaaaacggataa
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