Ornithobacterium rhinotracheale ORT-UMN 88: Q785_11680
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Entry
Q785_11680 CDS
T03303
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ori
Ornithobacterium rhinotracheale ORT-UMN 88
Pathway
ori03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ori00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q785_11680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ori03019
]
Q785_11680
03400 DNA repair and recombination proteins [BR:
ori03400
]
Q785_11680
Enzymes [BR:
ori01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Q785_11680
Messenger RNA biogenesis [BR:
ori03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Q785_11680
DNA repair and recombination proteins [BR:
ori03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Q785_11680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
HTH_40
Motif
Other DBs
NCBI-ProteinID:
AIQ00170
LinkDB
All DBs
Position
2333463..2335658
Genome browser
AA seq
731 aa
AA seq
DB search
MSSKNYKLKEALKKHFGFNSFKGQQEEIITSLLDGKDTFVLMPTGGGKSLCYQLPALMQE
GTAIVISPLIALMKNQVDAIRGLHEEEGIAHVLNSSLNRAQVAQVLDDIAKGVTKLLYVA
PESLTKEEYVNFFKDVKISFFAIDEAHCISEWGHDFRPEYRNIKSIIQKIGEQPIIALTA
TATPKVQEDIQKTLGMTDALVYKASFNRPNLFYEVRPKVDIDKQIIKFIKTRKGQSGIIY
CLSRKKEEEMAQTLELNGISALPYHAGLDAKTRAEHQDKFLMQDVDIVVATIAFGMGIDK
PDVRFVIHYDFPKSLEGYYQETGRAGRDGGEGYCLAFYDYKDIEKLEKFLSGKPVSEREV
GLQLLNEVVSYAETSMSRRKFLLHYFGEEFDEVNGEGADMDDNMRNPKKMIEVSKELKTF
LEIIEKTNQKLKLKDLVKLLVGKNTVITKSYSLETEDFFGIGKDYSESFWRSIGRQSIVN
DFVEKEVESYGILKLNQKAFDFIAKPHKFEIAEDHDYEALMSQQNDEPVASGGALDETLL
KYLQEQRKKSSKKHGIPPFAIFQDASLEDMASQYPTTMEELTNIFGVGEGKAKKFGKPFI
ELIERYVEDNDIEKPNDIVIKQIANKSTNKVYIIQSTDRKMNLEDIAKAKGMSMEELLSE
MESIVYQGTKININYYIEEVIDEDLQEEIMDFLMEDAETDSLAELLEEFGDDLDEEELRL
MRIKFISEVAN
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcgaaaaattacaaactaaaagaagctcttaagaaacattttggctttaattct
tttaaagggcaacaggaagaaatcattacctctctgcttgatggaaaggatacctttgtg
ttgatgccaactggaggaggaaagtcactttgctaccagctcccagcacttatgcaggag
ggaacggcaattgtgatttccccattgattgctttgatgaagaaccaagtagatgccata
aggggattgcacgaggaagaaggaattgcgcatgtgctgaactcttcgctcaatcgggct
caggtagcgcaggttttagatgatattgcaaaaggtgttaccaaattgctgtatgtagca
ccagaatctctgaccaaggaagagtatgtaaacttctttaaagatgttaaaatttctttc
tttgccatagacgaggcacactgtatttcggaatggggacacgactttagacctgagtat
agaaacataaaatctattattcaaaagattggtgaacagcccattatagcactcacagct
actgctacgccaaaagtgcaagaggatattcaaaaaacactgggcatgactgatgctttg
gtttacaaagcctcgttcaatcgtccgaatttgttttacgaagtacgcccaaaggtagat
attgataaacaaattattaaattcattaaaaccagaaaaggacaatcaggaattatctat
tgcctaagccgtaaaaaagaggaggaaatggcacaaacgcttgagctaaacggaatttct
gctttgccttatcacgctggtttggatgccaaaacacgcgccgagcaccaagataaattc
ttgatgcaagatgtagacattgttgtagcaactatcgcctttggaatggggatcgataag
cccgatgtgcgttttgtgattcactatgattttccaaaaagcttggaaggctattatcaa
gaaacaggacgtgcaggtcgtgatggtggcgaaggatactgtttggctttttatgattat
aaagacattgaaaaacttgaaaaatttctttcaggaaaacccgtttctgagcgtgaggta
ggactacaattgctaaacgaagtggtttcttatgcagaaacctctatgtcgcgcagaaaa
ttcttattacactactttggagaagaatttgatgaagtgaatggggaaggagcggatatg
gatgacaatatgcgtaaccctaaaaaaatgattgaagtttctaaggagctcaaaacattt
ttggaaatcattgaaaaaaccaatcaaaaattgaaattaaaagatttggtgaaattgctc
gtgggcaaaaacacggtgattactaaatcttattcattagaaaccgaagacttctttggg
ataggaaaagattattcagaaagtttctggagaagcattggtcgccagtcgattgtaaac
gattttgtggaaaaagaagtagaatcgtatggaattttaaaattgaatcaaaaggctttt
gacttcattgcaaaacctcacaaattcgaaattgcagaagatcatgactacgaggcattg
atgagccagcaaaacgatgagccagtagctagcggtggtgctttagatgaaactttgctt
aaatatttacaagaacaaagaaaaaaatcttctaaaaaacacggaattccgccttttgct
attttccaagatgcaagtttagaagacatggcttcgcaatatcctacaaccatggaagag
cttaccaacatttttggtgtaggagaggggaaagccaagaaattcggaaaaccgttcatc
gaactgattgaacgctatgtggaagacaatgatattgaaaaaccaaacgacattgtcatt
aagcaaattgccaataagtctactaataaggtgtatataatacaaagtaccgatagaaaa
atgaacttggaagacatagccaaggccaaaggtatgagcatggaggaacttctttctgag
atggaaagtattgtatatcaagggacaaaaatcaatattaattattatattgaggaagtg
atagatgaagatttgcaggaggaaatcatggatttcttgatggaggatgccgaaaccgat
agtttggcagaattgcttgaggagtttggcgatgatttggatgaggaagaattacgcctt
atgcgcataaaattcattagcgaagtagcaaactaa
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