Oricola thermophila: HTY61_07130
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Entry
HTY61_07130 CDS
T06643
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
orm
Oricola thermophila
Pathway
orm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
orm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HTY61_07130 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
orm03021
]
HTY61_07130 (rpoC)
03400 DNA repair and recombination proteins [BR:
orm03400
]
HTY61_07130 (rpoC)
Enzymes [BR:
orm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HTY61_07130 (rpoC)
Transcription machinery [BR:
orm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HTY61_07130 (rpoC)
DNA repair and recombination proteins [BR:
orm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HTY61_07130 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
QKV18245
UniProt:
A0A6N1VF79
LinkDB
All DBs
Position
complement(1464427..1468632)
Genome browser
AA seq
1401 aa
AA seq
DB search
MNQEVANLFNPQAPAQNFDAIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGTLLDMTLKDIERVLYFENYIVTEPGLTSLKEHQLLSEEEYMMAVEEFGEDQFTA
MIGAEAIQEILASLDLPKIANELREELETTTSDLKQKKLMKRLKVVENFIDSGNRPEWMI
MKVIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPGIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDMVLGLYYLSIVAENEPGQGMVFSDMGELHHALE
NKVVTLHTKIKGRFKTVDEGGNPVSKIYETTPGRMIIGELLPRHPKVSFDICNTEMTKKN
ISKMLDVVYRHCGQKETVIFADRIMSLGFGHACRAGISFGKDDMVIPESKAKIIAETDKI
AKEYEQQYNDGLITFGEKYNKVVDAWARCDDKLTEEMMAGIQAVQFEESGRQKQMNSIYM
MARSGARGSTRQMKQLAGMRGLMAKPDGSIIETPIISNFKEGLTVNEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIITQRDCGTDKGLTMSPIVDAGQVVASIGQRVLGRTV
LEDIVHPATGEVIVPAGRMVEEKDIDEIESAGIQTVKIRSALTCELKNGVCGVCYGRDLA
RGTPVNLGEAVGVIAAQSIGEPGTQLTMRTFHMGGTAQVVDQSFLEASYEGTIEIRNRNV
VRNSEGALIAMGRNMSVIIRDEKGEERATHRVTYGSKLMVDDGDKVKRGQRLAEWDPYTR
PIMTEVEGTVAFEDLVDGLSVQESADESTGITKRVVIDWRSTPRGSNLKPAITVLDGKGK
VAKLARGGDARFLLSVDAILSVEPGAQVKPGDVIARIPMESAKTKDITGGLPRVAELFEA
RRPKDHAIIAEIDGTIRYGRDYKNKRRIIIEPHDDSLEPVEYLIPKGRPFHLQDGDTIEK
GDFVLDGNPAPHDILAVKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVEI
TDPGGSQYIAGDNVDRIELEEVNERLIEEGKEPAKGEPVLLGITKASLQTPSFISAASFQ
ETTKVLTEAAVAGKIDTLQGLKENVIVGRLIPAGTGGTMNQIRRIATSRDELILEERRKA
SNAASADAMLVDMTDSGTPAE
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggttgcaaatcttttcaatcctcaggctcccgcccagaatttcgacgcg
atccgcatttcgatcgctagcccggaaaagatcctttcctggtcgtacggcgagatcaag
aagccggagacgatcaactaccgcacgttcaagcccgagcgtgacggcctgttctgcgcg
cgcatcttcggtccgatcaaggactacgagtgcctgtgcggcaagtacaagcggatgaag
tacaagggcatcatctgcgagaagtgcggcgtggaagtcacgctgagccgcgtgcgccgc
gagcgcatgggccatatcgagcttgcagccccggttgcccatatctggttcctgaagtcg
ctgccgtcgcgcatcggcacgctgctcgacatgaccctgaaggacatcgagcgcgtcctc
tatttcgagaactacatcgtcaccgaacccggcctgacctccctgaaggagcaccagctc
ctctcggaagaggaatacatgatggcggtcgaggagttcggcgaggaccagttcaccgcg
atgatcggcgccgaggcgatccaggagatcctggcatccctggacctgccgaagatagcc
aacgagctgcgcgaggaactcgagacgaccacgtcggacctcaagcagaagaagctgatg
aagcggctcaaggtcgtcgagaacttcatcgactccggcaaccgtcccgaatggatgatc
atgaaggtcattccggtgattccgccggacctgcgtccgcttgtgccgcttgacggcggc
cggttcgcgacctcggacctcaatgatctctaccgccgcgtcatcaaccgcaacaaccgt
ctgaagcggctgatggaactgcgtgcgccgggcatcatcatccgcaacgagaagcgcatg
ctgcaggaggccgtcgacgcgctgttcgacaacggccgccgcggccgcgtcatcacgggc
gccaataagcgcccgctgaagtcgctgtccgacatgctgaagggcaagcagggccgcttc
cgccagaacctgctcggcaagcgcgtcgactattccggccgctcggtcatcgtgaccggc
ccggaactcaagctgcaccagtgcggcctgccgaagaagatggcgctggagctgttcaag
ccgttcatctatgcgcggctcgacgccaagggttattcgtcgaccgtcaagcaggcgaag
aagctggtcgagaaggaaaagccggaagtctgggacatcctcgacgaggtcatccgcgag
caccctgtgctcctcaaccgcgcgccgacgctgcaccgcctcggcatccaggcattcgag
ccggtgttgatcgagggcaaggcgatccagctgcatccgctggtctgcaccgccttcaac
gcggacttcgacggcgaccagatggccgtgcacgttccgctgtcgctcgaggcgcagctg
gaagcgcgcgtgctgatgatgtcgaccaacaacatcctgcatcctgccaacggccagccg
atcatcgtgccgtcccaggacatggtgctgggtctctattacctgtcgatcgtggccgag
aacgagccggggcaggggatggtcttctccgacatgggcgagctgcaccatgcgctggag
aacaaggtcgtcacgctgcacacgaagatcaagggccgtttcaagacggtcgacgagggc
ggcaaccccgtctccaagatctacgagaccacgccgggtcgcatgatcatcggcgagctc
ctgccgcgtcacccgaaggtgtcgttcgacatctgcaatacggagatgaccaagaagaat
atctccaagatgcttgacgtcgtttatcgccactgcggccagaaagagaccgtgatcttt
gccgaccggatcatgtcgctcggtttcggtcatgcctgccgggcgggcatttccttcggc
aaggacgacatggtaatcccggaatccaaggcgaaaatcatcgcggagaccgacaagatc
gccaaggaatacgagcagcagtacaatgacggcctgatcaccttcggcgagaagtacaac
aaggtggtcgatgcctgggcccgctgcgacgacaagctgaccgaggaaatgatggccggc
atccaggccgtccagttcgaggaaagcggacgccagaagcagatgaactccatctacatg
atggcgcgttcaggtgcccgcggctcgacccggcagatgaagcagcttgccggcatgcgc
ggcctgatggccaagccggacggctccatcatcgagacgccgatcatctcgaacttcaag
gaaggcctgaccgtcaacgagtacttcaactcgacccacggcgcccgcaagggcctcgcg
gatacggcgttgaagacggcaaactcgggttatctgacccgccgtctcgtcgacgtggcg
caggactgcatcatcacgcagagggattgcggcaccgacaagggcctgaccatgtccccg
atcgtcgatgccggccaggtggtcgcctcgatcggtcagcgcgtgctgggccgcacggtg
ctcgaggacatcgtgcatccggcaaccggcgaggtcatcgtgcctgccggcagaatggtc
gaggagaaggacatcgatgagatcgagtccgccggcatccagaccgtgaagatccgttcg
gcgctgacctgcgaactgaagaacggcgtctgcggcgtctgctatggccgcgacctggcg
cgcggcacgccggtaaacctcggcgaggccgtgggcgtgattgccgcgcagtcgatcggc
gaaccgggcacccagctgaccatgcgtaccttccacatgggtggcacggcgcaggtggtg
gaccagtcgttcctggaagcttcctacgagggtacgatcgagatccgcaaccgcaacgtg
gtccggaactccgaaggcgctctcatcgccatgggccgcaacatgtcggtcatcatccgc
gacgagaagggcgaggagcgtgcaacgcatcgcgtgacctacggctccaagctgatggtg
gacgacggtgacaaggtgaagcgcggccagcgtctggccgagtgggacccgtacacccgg
ccgatcatgacggaagtcgagggtacggttgccttcgaggacctggtcgacggcctgtcg
gtccaagaatcggcggacgaatccaccggtatcaccaagcgcgtcgtcatcgactggcgt
tcgacgccgcgtggctcgaacctcaagccggcgattaccgtgctcgacggcaagggcaag
gtggccaaacttgccaggggcggtgatgcgcgcttcctgctgtcggtcgacgccatcctt
tcggtggagccgggcgcacaggtcaagccgggcgacgtgatcgcgcgtatcccgatggaa
agtgccaagaccaaggacatcaccggcggtctgccgcgtgttgccgagctgttcgaggcg
cgccgtccgaaggatcatgcgatcatcgcggaaatcgacggcacgatccggtatggacgc
gactacaagaacaagcgtcgcatcatcatcgagccgcatgacgattcgctcgaaccggtc
gaatacctgatcccgaaggggcgcccgttccacctgcaggacggcgacaccatcgagaag
ggtgacttcgtgctcgacggcaatccggcgccgcacgacatcctggcggtcaagggcgtc
gaggcgctggcctcctatctcgtcaacgagatccaggaagtctaccggctgcagggcgtg
gtgatcaacgacaagcatatcgaggtcatcgttcgccagatgctgcagaaggtggagatc
accgatccgggtggctcccagtacatcgccggcgacaatgtcgaccggatcgagctggaa
gaggtcaacgagcgcctgatcgaggaaggcaaggagcccgccaagggcgagcccgtgctg
ctcggcatcaccaaggcgtcgctgcagacaccgtccttcatctcggcggcgtccttccag
gagactaccaaggttctcacggaagcagccgtcgcgggcaagatcgacacgcttcagggc
ctgaaggagaacgtgatcgtcggccgcctgatcccggccggtaccggcgggacgatgaac
cagatccgccgcatcgcgacgtcgcgcgacgagctcatcctcgaggaacgtcgcaaggca
tcgaatgccgcaagcgcggatgccatgctggtcgacatgaccgactccggcacgcctgcg
gaatag
DBGET
integrated database retrieval system
