Oricola thermophila: HTY61_13220
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Entry
HTY61_13220 CDS
T06643
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
orm
Oricola thermophila
Pathway
orm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
orm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HTY61_13220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
orm03019
]
HTY61_13220
Enzymes [BR:
orm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HTY61_13220
Messenger RNA biogenesis [BR:
orm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HTY61_13220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
DEDD_Tnp_IS110
Flavi_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QKV19349
UniProt:
A0A6N1VJE5
LinkDB
All DBs
Position
complement(2751398..2752714)
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AA seq
438 aa
AA seq
DB search
MTDFKALGLSERVLHSVEANGYEKPTPIQAAAIPAVLEGHDIMGLAQTGTGKTAAFGLPL
IDKLLADSRRPFPKSCRALILAPTRELANQITTSLRGFVKRSRLQIATVVGGQSINAQIR
DLHAGKDILVATPGRLIDLMERKAIILAQTRFLVLDEADQMLDLGFIHSLRTIAKALPSE
RQTLLFSATMPKEIESLSKTYLNDPVRVEVSPAGKAADKVYQSVHFVSQRGKVELLKQHL
AERDDDLSLVFARTKHGAEKLMKHLVANGFSAASIHGNKSQGQRDRAIRDFRSRTVRILV
ATDVAARGIDIPGVSHVYNFDLPQVPESYVHRIGRTARAGAEGRAISFCAEDEARMLRDI
EKLTGVPITVAGGEHPGFGASGRKSGRGSGRPQGGGRSPDNQNRQRTHQGKRSEGEGDSA
RPSGRPKFRRNRKRRAAA
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
ttgacagatttcaaggccctcgggctttccgaacgcgttctccactccgtcgaggccaac
ggatacgagaaaccgaccccgatccaggctgccgcgattcccgcggtgctggagggacat
gacatcatgggcctcgcccagacgggcaccggcaagactgccgctttcggcctgccgctg
atcgacaagctgcttgccgattcccgacgtcccttccccaagagctgccgcgcgctgatc
cttgcgccgactcgcgaacttgccaaccagatcaccaccagcctccgcggtttcgtcaaa
cgctcccggctccagatcgcgacggtcgttggcggccagtcgatcaacgcccagatccgc
gacctgcatgccggcaaggacattctagtcgcgacgccgggccggttgatcgatttgatg
gagcgcaaggcaatcatcctggcgcagacccgtttcctcgtcctggacgaggcggaccag
atgctcgatctcggcttcatccattcgctgcgcacgatcgcgaaggccctgccttccgaa
cgccagacgctgctcttctcggcgaccatgccgaaggagatcgagagcctgtcgaagacc
tatctcaacgatccggtccgggtcgaggtgtcgcctgccggcaaggccgccgacaaggtc
taccagtcggttcacttcgtatcccagcgcggcaaggtcgaactgctcaagcagcatctg
gccgagcgtgatgacgacctgtcgctggtctttgcccgcaccaagcacggtgccgagaag
ctcatgaagcatctggttgcgaacggattttcggcggcgtcgatccatggcaacaagagc
cagggccagcgcgaccgcgcgatccgcgatttccggtcacgcaccgtgcgtatcctggtc
gccaccgacgttgccgcacgcggcatcgacatccccggcgtcagccatgtctacaacttc
gacctgccgcaggttcccgagagctatgtccaccgcatcggccgcacggcgcgtgccggc
gccgagggacgagcgatctccttctgcgccgaggacgaggcgaggatgctgcgcgacatc
gagaagctgaccggcgtgccgatcacggttgccggcggcgagcatccgggcttcggcgct
agcggccgcaagtccggtcgcggcagcggtcggccgcagggcgggggccgttcccccgac
aaccagaatcgccagcgcacccatcagggaaagcggtctgaaggcgagggtgactcggcg
cgtccgtcgggtcggccgaaattccgacgcaaccgcaagcgccgcgccgcggcctga
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