Ornithinimicrobium avium: DV701_04555
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Entry
DV701_04555 CDS
T05559
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
orn
Ornithinimicrobium avium
Brite
KEGG Orthology (KO) [BR:
orn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
orn03016
]
DV701_04555
Enzymes [BR:
orn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DV701_04555
Transfer RNA biogenesis [BR:
orn03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DV701_04555
Prokaryotic type
tRNA splicing ligases
DV701_04555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AXH95497
UniProt:
A0A345NKD9
LinkDB
All DBs
Position
complement(968989..970164)
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AA seq
391 aa
AA seq
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MEKINDKLYSWASIIADNALEQARLTAQLSIVDPHVALMPDAHLGMGATVGSVIPTVDAV
IPAAVGVDIGCGMVAVRTQFTEDDVRAARRPLSFLREQIERAVPLSPGRYNRKVLGLATE
SVVELEELAEVEGVRPADFAKNWRLQLGSLGGGNHFIEVTVDEDGAVWTFLHSGNRGVGN
LIARRFIKAAQQLAERRGDDLPDRALAYLTTADADYAAYLAHLHWAQEFARLNREVMMDR
VVDQLARFLGRSVDRLEEVNCHHNYTSLEEHFGKEVLVSRKGAIAAHAGVRGLIPGSMGT
RSYVVTGKGDEMSLCSAPHGAGREYSRTQARKTFTQDDLRERMAGIEYHDHPAFVDEIPD
AYKDIDVVMADAADLVSVDHVLRQIVNVKGQ
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atggagaagatcaacgacaagctctattcgtgggcctcgatcatcgccgacaacgcgctc
gagcaggcgcggctgaccgcgcagctgtcgatcgtcgacccgcacgtggcgctcatgccg
gacgcccacctggggatgggtgccacggtcggctcggtcatcccgacggtggacgcggtg
atcccggcggcggtgggcgtggacatcgggtgcgggatggtcgcggtgcgcacccagttc
accgaggacgacgtccgcgcggcgcgccggccgctgtccttcctgcgggagcagatcgag
cgcgccgtcccgctgagcccgggccgctacaaccgcaaggtcctcgggctggcgaccgag
tcggtcgtcgagctcgaggagctggccgaggtcgagggggtccggccggcggacttcgca
aagaactggcgcctgcagctggggtcgctgggcggcggcaaccacttcatcgaggtcacc
gtggacgaggacggcgcggtgtggaccttcctgcactcgggcaaccggggggtgggcaac
ctcatcgcgcgccgcttcatcaaggccgcgcagcagctcgccgaacggcgcggcgacgac
ctgcccgaccgtgccctggcctacctgaccaccgcggacgccgactacgccgcatacctc
gcccacctgcactgggcgcaggagttcgcccggctcaaccgtgaggtgatgatggaccgc
gtcgtggaccagctggctcgcttcctgggcaggagcgtcgaccgcctggaggaggtcaac
tgccaccacaactacacgtcgctcgaggagcacttcggcaaggaggtgctggtctcgcgc
aagggcgcgatcgccgcgcacgccggcgtccgcggactgatccccgggtcgatggggacc
aggtcgtatgtggtgaccggcaaaggcgacgagatgtcgctgtgctcggccccgcacggc
gcgggccgggagtactcccgcacccaggcccgcaagaccttcacccaggacgacctgcgg
gagcggatggccggcatcgagtaccacgaccacccggccttcgtcgacgagatcccggac
gcctacaaggacatcgacgtcgtcatggcggacgccgccgacctggtgtcggtcgaccac
gtgctgcgccagatcgtcaacgtcaaggggcagtga
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