Ornithinimicrobium avium: DV701_16850
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Entry
DV701_16850 CDS
T05559
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
orn
Ornithinimicrobium avium
Pathway
orn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
orn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DV701_16850 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
orn03021
]
DV701_16850 (rpoB)
03400 DNA repair and recombination proteins [BR:
orn03400
]
DV701_16850 (rpoB)
Enzymes [BR:
orn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DV701_16850 (rpoB)
Transcription machinery [BR:
orn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DV701_16850 (rpoB)
DNA repair and recombination proteins [BR:
orn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DV701_16850 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
Peptidase_M23
DUF8659
Motif
Other DBs
NCBI-ProteinID:
AXH97558
UniProt:
A0A345NRA0
LinkDB
All DBs
Position
3655820..3659296
Genome browser
AA seq
1158 aa
AA seq
DB search
MAASRTAKKTVSTARTASGRLSFAKIREPLEVPDLLALQTESFDWLLGNEAWQARVAAAE
AEGRTDMPGTSGLEEIFEEISPIEDFSGSMSLSFRDHRFEEQKYSIEECQEKDMTYSAPL
FVTAEFINNSTGEIKSQTVFMGDFPLMTPRGTFIVNGTERVVVSQLVRSPGVYFERSLDK
TSDKDIFSAKIIPSRGAWLEFEIDKRDQVGVRVDRKRKQSVTVLLKALGLSEAEILEQFG
DYESIRATLEKDHTADQDEALLDIYRKLRPGEPPTKEAAQTLLDNLYFNPKRYDLAKVGR
YKINKKLGLQAPLEESVLGIDDIVATIRYIVALHAGDSTIDMPVGDIPVEVDDIDHFGNR
RLRSVGELIQNQVRTGLSRMERVVRERMTTQDVEAITPQTLINIRPVVASIKEFFGTSQL
SQFMDQNNPLSGLTHKRRLSALGPGGLSRDRAGMEVLDVHPSHYGRMCPIETPEGPNIGL
IGSLASYGRINPFGFVETPYRRVHDGTVTDVVDYLSADEEDRFVIAQANAELNEDGTFAD
ERVLVRAKGTGEAVDVPAAEVEYMDVSARQMVSAATAMIPFLEHDDANRALMGANMQRQA
VPLVRAEAPLVGTGMEHRAALDSGDVVRAVKPGAVQEVSADLVTVANDDGTYTSYKIGKF
TRSNQGNCYNQQVRVDAGDRVEAGQLIADGPATDGGEMALGRNLLVAFMPWEGYNYEDAI
ILSQRIVQDDVLSSIHIEEHEIDARDTKLGPEEITRDIPNVSDEVLADLDERGIIRIGAE
VRDGDLLVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSMKVPHGETGTVIGVKVFDR
EDGDELPPGVNQLVRVYVANKRKITDGDKLAGRHGNKGVISKILPVEDMPFLQDGTPVDV
VLNPLGVPGRMNIGQILELHLGWAAAQGWKIEGEPDWARLIPADAREATPFTRVASPVFD
GAREEEIGGLLDSTTPTRDGVRLIDNRGKAKLFDGRSGEPFPDEISVGYMYILKLHHLVD
DKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDDVTG
RVKVYESIVKGDNIPEPGIPESFKVLIKEMQSLCLNVEVLSSDGTQIDLRESDTEVFRAA
EELGIDLSRREPSSVEEV
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
ttggctgcctcgcgcactgcgaagaagactgtgtccaccgctcgtacggcttccggccgt
ctgagctttgcaaagatcagggagcccctcgaggtccctgatctgctcgccctccagacg
gagagcttcgactggctcctcggcaacgaggcatggcaggcgcgtgtcgccgccgccgag
gccgagggtcgcacagacatgcccggcacctccggtctggaggagatcttcgaggagatc
tccccgatcgaggacttctccggctccatgtcgctgagcttccgcgaccaccggttcgag
gagcagaagtactccatcgaggagtgccaggagaaggacatgacctactccgcgccgctc
ttcgtgaccgcggagttcatcaacaactccaccggtgagatcaagagccagacggtcttc
atgggcgacttcccgctcatgacgccgcgcggcacgttcatcgtcaacggcaccgaacgt
gtcgtcgtctcccagctggtccgttccccgggggtctacttcgagcgcagcctcgacaag
acctccgacaaggacatcttctcggccaagatcatcccgagccgcggcgcctggctggag
ttcgagatcgacaagcgcgaccaggtcggcgtgcgcgtcgaccgcaagcgcaagcagagc
gtgaccgtcctgctcaaggccctgggcctgtccgaggccgagatcctcgagcagttcggc
gactacgagtcgatccgggccaccctggagaaggaccacacggccgaccaggacgaggcg
ctgctcgacatctaccgcaagctgcgtccgggcgagccgccgaccaaggaggccgcccag
accctgctggacaacctctacttcaaccccaagcgctacgacctggccaaggtcggtcgc
tacaagatcaacaagaagctggggctgcaggcaccgctggaggagtccgtcctcggtatc
gacgacatcgtcgccacgatccgctacatcgtcgcgctgcacgccggcgactcgacgatc
gacatgccggtcggcgacatcccggtcgaggtcgacgacatcgaccacttcggcaaccgt
cgcctgcgcagcgtcggcgagctcatccagaaccaggtccgcacgggcctgtcgcggatg
gagcgcgtcgtccgcgagcggatgaccacccaggacgtcgaggcgatcacgccgcagacc
ctgatcaacatccggccggtcgtcgcctccatcaaggagttcttcggcaccagccagctg
agccagttcatggaccagaacaacccgctctcggggctgacgcacaagcgtcgtctgtcc
gcgctgggcccgggcggtctgtcccgcgaccgcgccggcatggaggtcctcgacgtccac
ccctcgcactacggccgcatgtgcccgatcgagacccccgaggggcccaacatcggactg
atcggctcgctggcctcctacggccggatcaacccgttcgggttcgtcgagacgccctac
cgcagggtccacgacggcacggtcaccgacgtggtcgactacctctctgccgacgaggag
gaccgcttcgtcatcgcccaggccaacgccgagctcaacgaggacggcaccttcgccgac
gagcgcgtgctggtccgggccaagggcaccggcgaggccgtcgacgtgcctgccgccgag
gtggagtacatggacgtctcggcgcgacagatggtctccgccgcgaccgcgatgatcccc
ttcctcgagcacgacgacgccaaccgtgcgctcatgggcgccaacatgcagcgccaggcc
gtgccgctggtgcgggccgaggccccgctggtcggcacgggtatggagcaccgcgccgcc
ctggactccggggacgtcgtgcgcgccgtcaagccgggcgccgtccaggaggtctccgcc
gacctggtcaccgtggccaacgacgacgggacctacacgtcctacaagatcggcaagttc
acccgctccaaccagggcaactgctacaaccagcaggtccgggtcgacgcgggggacagg
gtcgaggccggccagctcatcgccgacggccccgcgaccgacggtggcgagatggcgctg
gggcgcaacctgctcgtggcgttcatgccgtgggagggttacaactacgaggacgcgatc
atcctctcccagcggatcgtgcaggacgacgtcctgtcctcgatccacatcgaggagcac
gagatcgacgcccgcgacaccaagctgggcccggaggagatcacgcgggacatcccgaac
gtctccgacgaggtcctggccgacctcgacgagcgcggcatcatccgcatcggtgccgag
gtccgcgacggcgacctgctcgtcggcaaggtcacgcccaagggtgagaccgagctgacc
ccggaggagcgcctgctgcgcgcgatcttcggcgagaaggcgcgcgaggtgcgcgacacc
tcgatgaaggtgccgcacggcgagaccggcacggtcatcggcgtcaaggtgttcgaccgc
gaggacggcgacgagctgcccccgggcgtcaaccagctggtgcgcgtctacgtggccaac
aagcgcaagatcaccgacggcgacaagctcgccggccgccacggcaacaagggcgtcatc
tccaagatcctcccggtcgaggacatgcccttcctccaggacggcaccccggtcgacgtc
gtgctcaacccgctgggcgtgcccggccggatgaacatcggccagatcctcgagctgcac
ctcggctgggccgcggcacagggctggaagatcgagggcgagccggactgggcgcggctc
atcccggcagacgcccgcgaggcgacccccttcacccgggtggccagccctgtcttcgac
ggtgcccgtgaggaggagatcggcggactgctcgactcgacgacgcccacccgcgacggt
gtgcgcctcatcgacaaccgcggcaaggccaagctgttcgacggccgctccggcgagccc
ttcccggacgagatctcggtcggctacatgtacatcctcaagctgcaccacctcgtggac
gacaagatccacgcccgcagcaccggcccctactcgatgatcacccagcagccgctgggc
ggcaaggcgcagttcggcggccagcgcttcggtgagatggaggtctgggcgctcgaggcc
tacggcgcggcctacgcgctgcaggagctgctgacgatcaagtccgacgacgtgaccggc
cgcgtgaaggtctacgagtcgatcgtgaagggcgacaacatccccgagccggggatcccg
gagtccttcaaggtgctcatcaaggagatgcagtcgctgtgcctgaacgtggaggtcctg
tcctccgacggcacgcagatcgacctgcgcgagtccgacaccgaggtcttccgggccgcg
gaggagctcgggatcgacctgagccgccgcgagccgagctctgtcgaagaggtctga
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