Odobenus rosmarus divergens (Pacific walrus): 101369047
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Entry
101369047 CDS
T05148
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X2
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
oro
Odobenus rosmarus divergens (Pacific walrus)
Pathway
oro03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oro00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101369047 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oro03021
]
101369047 (PCF11)
03019 Messenger RNA biogenesis [BR:
oro03019
]
101369047 (PCF11)
Transcription machinery [BR:
oro03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
101369047 (PCF11)
Messenger RNA biogenesis [BR:
oro03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
101369047 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
Motif
Other DBs
NCBI-GeneID:
101369047
NCBI-ProteinID:
XP_004408701
UniProt:
A0A2U3WIR3
LinkDB
All DBs
Position
Unknown
AA seq
1555 aa
AA seq
DB search
MSEQTPAEAGTAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPSTPGTVV
SSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETSNLGPGSAPSKLHVPQIPPMAVKPPHQVPVQPEKSRPGPSLQIQDLKGTNRDPRLN
RMSQHSSHGKDQSHRKEFLMNTLNQSDTKTSKTVPSEKLNSSKQEKSKSGEKIIKKELDQ
LDSKSKSKSKSPSPLKNKLSHTKDLKNQESESARVSDMSKRDPRLKKHLQDKTDSKDDDV
KEKRKTAEKKDKDEHMKSSEHRLVGSRNKIINGIVQKQDTITEESEKQGTKPGRSSTRKR
SRSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTSTPKAGKIRQSGVKQSHMEEFTLPSR
EERNAKRSNKQDIRDPRRIKKTEEERPQEAANQHSTKSGTEPKENVENWQSSKSTKRWKS
GWEENKSLQQGDEHSKSPHLRHRESWSSTKGILSPRAPKQQHRLSVDANLQIPKELTLAS
KRELLQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGVREEQRSPFNDRFPLKRPRYED
SDKPFVDSPASRFAGLDTNQRLTALAEDRPLFDGPSRPSVTRDGPTKMIFEGPNKLSPRI
DGPPTPGSLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQ
AGGGGFRFEGSPGLRFEGSAGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEGPHGQPVG
GLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPAGGIRFEGPLLQQGVGMRFEGPH
GQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVPGGGLRI
EGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTGQPGPQRFDGPPGQ
QVQPRFDGVPQRFDGPQHQQASRFDIPLGLQSTRFDNHPSQRLESVSFNQTGPYNDPPSN
AFNAPSQGLQFQRHEQMFDSPQGPNFNGPHGPGNQSFSNPLNRASGHYFDEKNLQSSQFG
NFGNLPAPITVGNIQASQQVLTGVAQPVAFGQGQQFLPVHPQNPGAFVQNPSGALPKAYP
DNHLSQVDVNELFSKLLKTGILKLSQPDSATTQVNEVAAQPPPEEEEDQNEDQDVPDLTN
FTVEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKVT
HRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSVPAGPAGAV
ESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDCTPSPSKTPVE
NPLNIMLNIVKNELQEPCESPKVKEERIDTPPACTEESIATPTEIKTENDTVESV
NT seq
4668 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcagacgccggccgaggccggtactgcgggggcccgggaggacgcctgtcgg
gattatcaatcatcactcgaagacctgaccttcaatagcaaaccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccttcctcagagaagcttcctgttatgtaccttatggattctatc
gtgaaaaacgttggaagagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactagaaaaagtttatttaaattacgttcc
acatgggatgaaatattccctttgaagaaactttatgccctggatgtcagagtcaattcg
ttagatcctgcttggcctattaaacctctgccccccaatgtgaatacatctagcatccat
gtgaatcctaaatttttaaataaatcgcctgaagaaccttcaacacctggcacagtggtc
agttcccctagcatctccactcctccaattgttcctgatatacaaaagaatcttacccaa
gaacaactaataaggcagcagttactggcaaaacaaaaacagttgttagaacttcagcag
aaaaagctagagcttgagctagagcaagctaaggcacaactggcagtttctcttagtgtt
cagcaggagacatccaacttaggtcctggatctgcaccatccaaattacatgttccacaa
attccccctatggcagttaaacctccccatcaggttcctgtgcaacctgagaaaagccgt
ccaggtccatccttacaaattcaggatttgaaaggaactaatcgggatcctcgtcttaat
aggatgagtcaacattcttcgcatggaaaagatcagagtcacaggaaagaattcctaatg
aacacattgaaccaatctgatactaagacaagtaaaactgtaccctctgaaaaactaaat
tcatccaagcaagagaaaagtaaatcaggtgaaaaaataatcaagaaagaacttgaccaa
ttagattctaaatctaaatctaaatctaaatcaccatcacctttgaaaaacaaattatcc
cacacaaaggacctgaaaaatcaagaatctgaaagtgcaagggtgtctgatatgagcaag
agagatccaaggttaaagaaacatcttcaggataagactgatagcaaagatgatgatgta
aaagagaagagaaaaactgcagaaaaaaaggataaagatgagcacatgaaatcatctgaa
cacagactggttggaagtagaaataaaatcatcaatggcattgtacaaaagcaggataca
ataacggaagaatcagaaaaacaagggacaaaaccagggagatcaagtactagaaagcga
tcaagatcgagatcacccaagtctcggtcaccaattatacattctccgaagagaagagat
aggcggtcacccaaacgaaggcaaaggagtatgtctccaacctcgacacccaaagctgga
aagattcggcaatcaggagttaagcagtcacacatggaagagtttacgctaccttccagg
gaagagcggaatgctaagagaagtaataaacaagatattcgagatccaaggagaataaaa
aagactgaagaggaacgaccacaagaagctgcaaatcagcattctacgaagtcaggcact
gaaccaaaggagaatgtagaaaattggcaaagttccaagtctaccaaaagatggaaatct
ggttgggaagaaaataaaagcttacaacagggtgatgaacatagtaaatctcctcatcta
aggcatagggagagctggtcaagcactaaaggaatcttgtcacctcgagccccaaagcag
cagcatcgattaagtgtagatgccaaccttcagattcctaaagagttaactcttgcaagc
aaaagagaattacttcaaaagacgagtgaacgtttagcatctggtgaaattacacaggat
gagttccttgttgttgtgcatcaaattcgacagctatttcagtatcaagaaggtgtacga
gaagagcagagatcaccattcaatgatcgttttccacttaagcgacctagatatgaagat
tcagataaaccatttgtagatagcccagcatcaagatttgccggccttgatacaaatcag
cgacttacagctttagctgaagatagaccattatttgatggacctagtaggccatcagta
acaagagatggcccaaccaagatgatttttgaaggacctaataaattaagccctagaatt
gatggacctcctacaccaggttctcttcggtttgatgggtcaccaggacaaatgggggga
ggtggccctttgagatttgaaggaccacaaggtcagttaggaggtgggtgtcctttgaga
tttgaaggtcctccaggaccagtagggacacctctgcggtttgaggggccaattggtcaa
gcaggaggaggtggttttcggtttgaaggttcccctggtctgaggtttgagggatctgca
ggtggtttgagatttgaaggaccagggggccagcctgtgggtggtctcaggtttgaggga
catcggggtcaacctgtgggtggtctaaggtttgagggacctcatggtcagcctgtgggt
ggacttagatttgataatccccgaggtcagcctgtcggtggacttagatttgaagggggt
catggtccgtcaggggctgcaattaggtttgatggacctcatggtcagccagcaggtggg
atcagatttgagggccctttgctacagcagggagttggaatgaggtttgagggcccccat
ggtcagtcagtagctggtttgaggtttgaaggacaacataatcaacttggtgggaacctt
aggtttgagggtccacatggtcaaccaggggttgggatcaggtttgaaggaccgttagtt
caacaaggaggtggaatgaggtttgagggtccttctgtgccaggaggtggcctgagaatt
gaagggcctctgggtcaaggtggtccaagatttgaaggttgtcatgctttaaggtttgat
gggcagccaggtcagccatcactcttgccaagatttgatggactgcatgggcagccaggt
cctagatttgaaagaactggtcagccaggcccacagagatttgatggaccacctggacag
caggttcaaccaagatttgatggtgtacctcaaagatttgatggtccacaacaccagcaa
gcatcaaggtttgatattcctcttggtcttcaaagcacacgatttgacaatcatccttca
cagaggcttgaatcagtatctttcaatcagactggtccatacaatgatccacctagcaat
gcttttaatgccccatcccaaggactacagttccaaagacatgaacaaatgtttgattca
cctcaaggaccaaattttaatggaccacatggccctggaaaccagagcttctccaatccc
cttaacagagcttctggacactattttgatgaaaagaatcttcagagttcccaatttgga
aacttcggcaatttacctgctccaataacagtaggaaatattcaggcatctcagcaggtt
cttactggtgttgctcagccagtagcatttggccaaggacaacagtttttgccagttcat
ccacaaaatcctggagcatttgttcagaatccttcaggagctcttcctaaggcatatcct
gataatcatctcagtcaggtggatgtaaatgaattattttcaaaactgctaaaaacagga
attctcaaattatctcagcctgattcagctacaacacaagtaaatgaagttgctgctcag
cctccccctgaagaggaggaagatcaaaatgaagatcaagatgttccagatcttaccaat
tttacagttgaagaattgaaacaacgttatgatagtgttataaatcgactgtacactggt
attcagtgttactcctgtggaatgaggtttacaacatcacagacagatgtatacgcagat
cacttggactggcattatcggcaaaatagaactgaaaaagatgttagcagaaaagtcact
catagacgttggtactacagtttaacggactggatagaatttgaggaaatagctgattta
gaagaacgtgcaaagagccagttttttgaaaaggtgcatgaagaagtcgtgctcaagact
caggaggctgctaaagaaaaggagttccaaagtgtacctgccggaccagctggagcagtt
gagagttgtgaaatctgtcaagaacagtttgaacaatactgggatgaagaagaggaggaa
tggcatttaaaaaatgctattagagtagatggaaagatttatcatccatcatgttatgaa
gattatcagaatacatcttcatttgattgtacaccatctcccagcaagacaccagttgaa
aaccctttgaacattatgttgaacattgtcaaaaacgaattgcaggaaccctgtgaaagt
cccaaagttaaggaagaacgaattgataccccaccagcttgtacagaggaaagcatagca
acacccactgaaattaaaacagaaaatgatacagtcgagtcagtttaa
DBGET
integrated database retrieval system
