Odobenus rosmarus divergens (Pacific walrus): 101370395
Help
Entry
101370395 CDS
T05148
Symbol
SKIV2L2
Name
(RefSeq) superkiller viralicidic activity 2-like 2 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
oro
Odobenus rosmarus divergens (Pacific walrus)
Pathway
oro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101370395 (SKIV2L2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oro03019
]
101370395 (SKIV2L2)
03041 Spliceosome [BR:
oro03041
]
101370395 (SKIV2L2)
03009 Ribosome biogenesis [BR:
oro03009
]
101370395 (SKIV2L2)
03016 Transfer RNA biogenesis [BR:
oro03016
]
101370395 (SKIV2L2)
Enzymes [BR:
oro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101370395 (SKIV2L2)
Messenger RNA biogenesis [BR:
oro03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
101370395 (SKIV2L2)
Spliceosome [BR:
oro03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
101370395 (SKIV2L2)
Complex C
U4/U6.U5 tri-SnRNP related factors
101370395 (SKIV2L2)
Ribosome biogenesis [BR:
oro03009
]
Eukaryotic type
Pre-60S particles
Helicases
101370395 (SKIV2L2)
Transfer RNA biogenesis [BR:
oro03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
101370395 (SKIV2L2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
101370395
NCBI-ProteinID:
XP_004416371
UniProt:
A0A2U3X2P0
LinkDB
All DBs
Position
Unknown
AA seq
1042 aa
AA seq
DB search
MADAFGDELFSVFEDDSTAAPGTKKDKEKEKGKWKGPPGSAEKGGKRFDGKLQSESTNIG
KSKRDADFEGTDEPIFGKKPRVEESVTEDLSLADLMPRVKVQSVETVEGCTHEVALPADE
DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH
KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGD
QKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMV
EEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALF
ATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD
EKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPG
VVEKVKNSEEQYNKIVIPNEESVIIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLV
KVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKP
DEKGEMQVVPVLVHLLSAISSVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPI
DDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELK
KARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDL
SAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLS
SFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELE
NKFAEGITKIKRDIVFAASLYL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgctttcggggatgaactgttcagcgtgttcgaggacgactcgaccgccgcg
cccggaactaaaaaagacaaggagaaagaaaaggggaaatggaaggggccgccggggtct
gcggaaaagggcgggaaacgttttgatggtaaattgcaatcagagtcaactaatattgga
aaatccaagagagatgcagattttgagggcacagatgaaccgatttttggaaagaagcct
agggtggaagaatcagtaactgaagatttaagtttggcagacttgatgcccagagtcaag
gtacaatctgttgaaactgtcgaaggatgtacccatgaggttgcacttcctgcagatgaa
gattatttaccacttaaacctcgagttggaaaagctgcaaaggaatacccgttcattctt
gatgcttttcaaagagaagccattcagtgtgttgataataatcagtctgttttagtatct
gcacatacatcagcaggaaaaactgtatgcgctgagtatgccattgcattggccttaagg
gaaaaacagcgtgtaatatttaccagcccaattaaggctctgagtaaccagaaataccgg
gaaatgtatgaagaatttcaagatgttggcttgatgactggagatgttactattaatcct
acagcatcttgtcttgttatgaccacagagattttgagaagcatgctgtaccgaggttct
gaagttatgcgagaagtagcgtgggtcatatttgatgaaattcattacatgagagattca
gagcgtggtgttgtatgggaagaaactattattttgcttcctgacaatgtccactatgtg
tttctttcggctactattccaaatgcccgacagtttgctgaatggatttgccatttacat
aagcagccttgtcatgtaatttatacagattatcggcccactccattgcagcattacatt
tttccagcagggggagatggcctgcaccttgtggttgatgaaaatggtgacttcagagaa
gataattttaatactgcaatgcaagtacttcgagatgctggtgatttggcaaaaggagat
cagaaggggcggaaaggaggaacaaaaggaccatcgaatgtcttcaagattgtgaagatg
attatggaaagaaattttcaacctgtaattattttcagtttcagtaaaaaggactgtgaa
gcctatgcacttcagatgaccaaattagattttaacacagatgaagaaaagaaaatggtt
gaagaagtattcagtaatgccattgactgcttgtctgatgaagataaaaaactccctcag
gttgaacatgtacttcctcttttgaagcgagggattggtattcaccatggtggtttactt
cctattttgaaagaaactatagaaattctcttttctgaaggattgataaaggccttattt
gccacagagacttttgctatgggaattaatatgccagctcgaactgttttatttacgaat
gcccggaaatttgacgggaaagatttccgatggatttcctctggtgaatacattcagatg
tctggtcgagctggaaggaggggaatggatgatagaggaattgtaattcttatggtggat
gaaaagatgagcccaacgatcggaaaacaactacttaagggctcagccgatcctctaaat
agtgctttccatttgacctacaacatggttttgaacttattacgtgtagaagaaattaat
cccgagtacatgttggaaaagtccttttaccagtttcagcattatagagcaattccagga
gtagtagagaaggtaaagaactcagaagaacagtataataaaatagtaataccaaatgag
gaaagtgtcattatctattacaagattagacagcagcttgccaaactgggtaaagaaatt
gaagaatacattcataaaccaaagtattgcttaccatttctacagccaggtcgtttggta
aaggtaaagaatgaaggagatgattttggctggggagtagtggtaaatttttcaaagaag
tcaaatgttaagcctaattctggtgaactggatcctttatatgtagttgaagtactcctg
cgctgtagcaaagaaagtttgaaaaattcagctactgaggctgcaaaaccagctaaacct
gatgagaaaggagagatgcaggttgttccagttttggtgcacctcttgtctgccatcagc
agtgttaggctttacattcctaaagaccttcgaccagtggataatagacagagtgtttta
aaatcaatacaggaagttcagaaacgttttcctgatggtgttcctttattagatcctatt
gatgatatgggcattcaagatcaagggctgaaaaaagttatccagaaagtggaggctttt
gagcatagaatgtattctcatccacttcacaatgatccgaatttggaaactgtgtatacg
ctttgtgaaaaaaaagcacagattgcaatcgatattaaatctgcaaagcgagaattaaag
aaagcaagaactgtcctacaaatggatgagctcaaatgtcgcaaacgtgttttaaggagg
ttgggatttgctacttcttctgatgtcatagagatgaaaggacgagtggcttgtgagata
agcagtgctgatgagctccttctaactgagatgatgtttaatggccttttcaatgacctg
tctgcagaacaggcaacggcactactaagctgctttgtgtttcaagagaattctagtgag
atgcccaaattaacagagcagttagcaggaccacttcgtcaaatgcaggaatgtgctaaa
agaattgcaaaagtttcagcagaagccaaactggaaattgatgaggaaacttacctaagc
tcattcaaacctcacttaatggatgtagtgtatacctgggcaactggagctacatttgcc
catatctgcaaaatgacagatgtctttgaaggcagcataattcgttgtatgaggcgcctg
gaagaactgcttcgacagatgtgtcaagcagcaaaagccattggaaacactgagctggaa
aacaaatttgcagaaggaatcaccaaaatcaagagggatattgtgtttgccgccagcctc
tacttataa
DBGET
integrated database retrieval system
