Odobenus rosmarus divergens (Pacific walrus): 101373280
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Entry
101373280 CDS
T05148
Symbol
COL11A2
Name
(RefSeq) collagen alpha-2(XI) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
oro
Odobenus rosmarus divergens (Pacific walrus)
Pathway
oro04820
Cytoskeleton in muscle cells
oro04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
oro00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
101373280 (COL11A2)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
101373280 (COL11A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
oro00536
]
101373280 (COL11A2)
Glycosaminoglycan binding proteins [BR:
oro00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101373280 (COL11A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
101373280
NCBI-ProteinID:
XP_004407744
UniProt:
A0A2U3WGC1
LinkDB
All DBs
Position
Unknown
AA seq
1736 aa
AA seq
DB search
MERCRRCHRLLLLVPLVLGLSAVPARAGARPVDVLRALRFPSLPDGVRRARGICLADVAY
RVSRPAQLSAPTHQLFPGGFPKDFSLLTAVRTRPGLQAPLLTLYSAQGVQQLGLELGRPF
RFLYEDQTGRPRPPAQPVFRGLSLADGKWHRVAVAVKGQSVTLIVDCKKRVTRPLPRSAR
PLLDTHGVIIFGARILDEEVFEGDIQELVIVPGVQAAYESCEQKELECEGAWRERPQKQQ
SHRTQRSPKQQPSRLHRPQNQEPQRQPTESFYSDYETPYYDARTSGTTPNYQDPSPGEEE
GILESSPLPPPEEEQTDLQVPSTADRFLTEEYGEGGTDPPAGPYDYTYGYGDDYREEMEL
GPALSAETAPSGAAARGPRGLKGEKGEPAVLEPGMLVEGPPGPEGPAGLIGPPGIQGNPG
PVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQ
ARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRA
GADGARGMPGEPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPR
GLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPHGPKGSLGPQGEPGPPGQQGTPGTQGLP
GPQGAIGPHGEKGPRGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPR
GVKGVDGIRGLKGHKGEKGEDGFPGFKGDMGVKGDRGEVGVPGSRGEDGPEGPKGRTGPT
GDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGER
GPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKD
GLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLTGTA
GKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGSGLKGNEGPAGPPGPAGSPGER
GAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVA
GEDGDKGEVGDPGQKGSKGNKGEHGPPGPPGPLGPVGQPGAAGADGEPGARGPQGHFGAK
GDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPP
GGAGNLGPPGEKGEPGESGSPGVQGEPGVKGPRGERGEKGESGQPGEAGPPGPKGPAGDD
GPKGNPGPVGFPGDPGPPGEGGPRGQDGVKGDRGEDGEPGQPGSPGPTGENGPPGPLGKR
GPAGSPGPEGRQGEKGAKGDPGAVGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGHP
GATGQAGPPGPVGPPGLPGLRGDVGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSA
GQKGETGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPAGPKGEKGIQGPPGHPGPPGEV
IQPLPIQMPKKTRRSVDGSRLMQEDEAIPTGGAPGSAGGLEEIFGSLDSLREEIEQMRRP
TGTQNSPARTCQDLKLCHPELPDGEYWVDPNQGCARDAFRVFCNFTAGGETCVTPRDDVT
QFSYVDSEGSPVGVVQLTFLRLLSVSAHQDVSYPCSGVAQDGPLKLRGANEDELSLETSP
YVKEFRDGCQTQQGRTVLEVRTPVLEQLPVLDASFSDLGAPPRRGGVLLGPVCFMG
NT seq
5211 nt
NT seq
+upstream
nt +downstream
nt
atggagcgatgcagacgctgccatcgcctcctcctgctggtaccgctggtgctggggttg
agcgcggtccccgccagggcaggtgcacgccctgtggatgtgctccgggccctgaggttc
ccctcccttcctgatggcgtccggagggcgagaggcatctgtctggctgatgtggcctac
cgagtatcccgacccgcccagctcagtgcacccacccaccagctcttcccaggaggtttt
cccaaagatttctcattgctgactgctgtccggacccgccctggcctccaggctcccctc
ctgactctctacagtgcccagggtgtccaacagctgggcctggagcttggccgacccttc
cgcttcctgtatgaggaccagactggacggcctcgacccccggctcagccagtcttccga
ggcctcagcctagcagatggcaagtggcaccgtgtggctgtggctgtgaagggccagtct
gtcaccctcatagttgactgcaagaagcgggtcacccggcctctcccccgaagtgctcgt
ccactgttggacacccacggagtgattatctttggtgcccgtatcctggatgaagaagtg
tttgagggtgacatccaggagcttgtcattgtcccaggggtgcaagctgcctacgaatcc
tgtgaacagaaggagctggagtgtgaaggagcttggagggagagacctcagaaacaacag
tctcacaggacccagagatctccaaagcagcagccatcaagacttcataggccacaaaac
caggaacctcagcgacagcccactgagtctttctactctgactacgagaccccctattat
gatgcgaggacttcagggacgacccctaattatcaggacccctccccgggtgaagaggaa
ggaatcctggaatcaagccccttgccaccccctgaggaggagcagacagatctccaggtc
ccctccacagccgacaggttcctgacagaggaatatggggagggtggcacagacccccca
gcagggccctacgattacacctatggctatggggacgattatcgtgaggagatggagctt
ggccctgccctgtctgcggagacagccccctctggagccgctgcccgtggaccccggggg
ctgaagggagagaagggggagcctgcggtgctggaacctggtatgctagtggaggggcct
cctggcccagaaggccctgcggggttgattggtccccctggcatccagggcaacccaggc
ccagttggagaccctggcgagaggggcccccctggccgagcagggctccctggatcagat
ggggcccctggccctcctggcacatctctcatgctcccattccggtttggcagtggtggg
ggtgacaagggccctgtggtggcagcccaagaggctcaggcccaggcgattctgcagcag
gcacgtctggcgctccggggaccacctggccccatgggatacacaggccgccctggacct
ttgggacaacctgggagccctggcctgaaaggagaatcaggagacttaggacctcagggc
cccagaggacctcaaggcctcacaggccctcctggcaaggctgggcgaaggggccgagcg
ggtgctgatggagcccgagggatgcctggagaacctggagtgaagggtgaccgaggtttt
gatggactcccagggctacctggggagaagggacaccggggtgatactggtgcccagggc
cttcctggcccccccggtgaggatggagagcggggagatgatggggagattgggcctcgg
ggactgcctggagagtcgggacctcgaggtctccttggccccaaaggcccacctggtatt
cccggacccccgggagtccgaggcatggatggtccccatggtcccaaagggagcttgggg
ccccagggagagccaggacctcctggacaacagggcactcctggaacccagggtctcccc
gggccccagggtgccattgggcctcatggagagaagggtcctcgagggaaaccagggctc
cctggcatgcctggctcagatggaccgccgggtcaccctggaaaggaaggtcctcctgga
accaaaggaaaccagggtccatctggacctcagggtcctctaggatacccgggacctcga
ggtgtcaagggtgtggatggaattcgtggtctgaagggtcataagggtgaaaagggcgag
gatggctttcctgggttcaaaggcgacatgggcgtgaagggtgaccggggagaggttgga
gttcctggatccaggggagaagatggtcccgaggggccgaagggacgcactggacccact
ggagaccccggcccccccgggctcatgggcgaaaagggcaagctgggtgttcctggtctg
cctggctaccctggacgccagggtcccaaggggtccctgggatttcctggttttcctggt
gccagtggagagaagggagcccggggcctgtcggggaagtcagggcctcggggagagcgg
ggccccacgggtccccggggtcagcggggaccccgaggtgccactgggaagtctggcgct
aagggaacatcaggtggtgatggcccccatgggccccctggagaaaggggtctccctgga
cctcaaggccccaatggatttcctggccccaaaggacctccgggtccccctgggaaggat
gggctgccaggacacccaggccagagaggagaagtgggtttccaagggaagactggcccc
cctggccctccaggggtggtgggacctcagggagcagcaggagaaacagggcccatgggg
gagagaggtcaccccggccccccaggtcccccgggagagcagggactgactggaacagct
ggaaaagaaggaacgaagggtgaccctggtcccccaggggccccagggaaggatggacct
gctggtctgaggggcttcccaggggagagaggcctccccggcactgccggtggatccggt
ttgaagggaaacgaaggtccggccggtccccctggccctgcaggctcccctggggagcga
ggtgcagcaggatctgggggacccatcggccccccggggcgcccaggcccacagggtccc
cctggagccgcaggagagaaaggtgtcccgggtgagaagggccccattggtccaactggc
cgagatggggtgcagggtccggtggggctccctggtcctgctggacccccgggtgtggca
ggagaggatggagacaagggtgaggtaggagaccccggacagaagggctctaaagggaat
aagggtgaacatggccctcctggaccccctggaccccttggtcctgtggggcaacctgga
gcagcgggagcagatggggagcccggagctcggggaccccagggacactttggagccaaa
ggtgacgaaggaacgagaggattcaatgggcccccaggacccattggcctacagggtttg
ccaggcccgtcgggtgagaagggagaaacaggagatgtgggccctatgggaccacccggc
cccccaggacctcgaggcccagctggacccaatggagcagatggtccgcaaggtccccca
ggaggggctgggaacctgggtccccctggagagaagggggagcccggagagtcaggatct
ccaggggtccagggcgagccaggtgtcaagggcccacgcggggagcgtggggagaaagga
gagtctgggcagccgggagaggcaggaccgccagggcctaaaggccccgctggggatgat
ggccccaaagggaaccctggtcctgttggttttcctggtgatcctggccctcctggagaa
ggtggccctcggggccaggatggtgtaaagggagaccgaggagaggacggcgagccagga
cagcctggatcccctggtcccactggggagaatggaccccccggaccacttggaaagcgg
ggtcctgccggctcgcctggtcctgaggggcggcaaggagagaagggagccaagggggat
cctggtgctgtgggtgccccggggaagacaggccctgtgggtccagcaggcccagcaggg
aaacctggtcctgatggtctaaggggactcccgggctcagtgggtcagcaaggccatcct
ggggccacaggccaggcggggcctccaggtcctgtgggacccccggggcttcctggcctc
cgaggtgatgttggagccaagggcgagaagggtcacccaggtctcatcggactgatcggg
ccccctggggagcagggggagaagggtgatcggggacttcctggccctcagggctctgct
ggacagaagggagagacgggtatcccgggagcatctggtcctatcggtcctggagggcct
cctggcctccccggacctgctggccccaaaggagccaaaggagccacaggcccagctgga
cccaagggagagaagggcatccagggtcctccaggacacccgggccccccgggcgaggtg
atccagcccctgcccatccagatgcccaagaagactcggcgctcggtggacggaagccgc
cttatgcaggaggatgaggccataccgactgggggtgctccgggcagtgctggggggctg
gaggagatctttggctcccttgactccctgcgggaggagattgagcagatgaggcggccg
acagggacccagaacagccccgctcgcacctgccaggacctgaagctctgccacccggag
ctgcctgacggagagtactgggtcgaccccaaccagggctgtgctcgggacgccttccgg
gttttctgcaactttacagcggggggggaaacgtgtgtgacccccagggatgacgtcacg
caattctcctacgtggactcagaaggctccccagtcggtgtggtccagctcaccttcctg
cggctgctcagcgtctcagcccaccaggatgtctcctatccctgctctggggtggcccaa
gatggtcccctgaagctccggggggccaatgaggatgagctgagcctggagaccagccct
tatgtcaaggaattcagagacggctgtcagacgcagcaaggccggacggtgctggaggtg
cggacacctgtgctggagcagctcccagtgctggacgcctccttctcagacctgggggcc
ccccctcggcggggaggggtgctgctggggcctgtctgcttcatgggctag
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