Odobenus rosmarus divergens (Pacific walrus): 101384845
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Entry
101384845 CDS
T05148
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
oro
Odobenus rosmarus divergens (Pacific walrus)
Pathway
oro03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oro00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101384845 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oro03019
]
101384845 (XAB2)
03041 Spliceosome [BR:
oro03041
]
101384845 (XAB2)
Messenger RNA biogenesis [BR:
oro03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
101384845 (XAB2)
Spliceosome [BR:
oro03041
]
Complex B
Other components
Prp19-related factors
101384845 (XAB2)
Complex C
101384845 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
TPR_2
TPR_8
Suf
TPR_19
TPR_15
ARM_TT21
ARM_TT21_C
TPR_NPHP3
TPR_1
Motif
Other DBs
NCBI-GeneID:
101384845
NCBI-ProteinID:
XP_004412220
UniProt:
A0A2U3WSC5
LinkDB
All DBs
Position
Unknown
AA seq
855 aa
AA seq
DB search
MVVMARLSRPQRPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKRRCVTDPAYEDANNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARIILEK
ATKVSFKQVDDLASVWCECGELELRHENYDQALRLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLS
DEHAREMCLRFADMECRLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAERDQPPRAQSKILFVRSDASREELAELAQQANPEEIELGGDDDEDDMDLEPNEVRLE
QQSVPAAVFGSLKED
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcgtctttcccggccgcagcggccggacctcgttttcgaggaagag
gacctcccttatgaggaggagatcatgcggaaccagttctcggtcaagtgctggctccgc
tacattgagttcaaacaaggtgccccgaagcccaggctcaaccagctgtatgagcgggca
ctgaagctgctgccctgcagctacaaactctggtaccgatacctgaaggcacgccgggca
caggtgaagcgtcgctgcgtgactgaccctgcctacgaagatgccaacaactgccacgag
agggcctttgtgttcatgcacaagatgccccgtctgtggctggactactgccaattcctg
atggaccagggccgcgtcacacacacccgccgcacatttgaccgtgccctgcgggccctg
cccatcacgcagcactctcgtatctggcccctgtacctgcgcttcctccgctcccacccg
ctgcctgagacagccgtgcggggctaccggcgcttcctcaagcttagccccgagagcgca
gaggagtacatcgagtacctcaagtccagcgaccggctggatgaagccgcgcagcgcctg
gccaccgtggtcaatgatgagcgcttcgtatccaaggccggcaagtccaactaccagctg
tggcatgagctctgtgacctcatctcccagaacccagacaaggtgcagtcgctcaatgtg
gatgccatcatccgcgggggcctcacccgcttcactgaccagctgggcaagctctggtgc
tcgctggctgactactatatccgcagcggccacttcgagaaggctcgagatgtgtatgag
gaggccatccggaccgtgatgaccgtgcgggacttcacccaggtgttcgacagctacgcc
cagtttgaggagagcatgattgcagccaagatggagacagcctcagaactggggcgggag
gaggaagatgatgtggacctggagctgcgcctggcccgcttcgagcagctcatcagccgg
cggcccctgctcctcaacagcgtcttgctgcgccagaacccgcaccacgtgcacgagtgg
cacaagcgcgtggccctgcaccagggccgtccccgggagatcatcaacacatacacggag
gctgtgcagacggtggaccctttcaaggcgacaggcaagccccacacgctgtgggtcgca
tttgccaagttttacgaggacaacgggcagctggacgatgcccgcatcatcctggagaag
gccaccaaggtgagcttcaagcaggtggacgacctggccagtgtgtggtgtgagtgcggc
gagctggagctccggcacgagaactatgaccaggccttgcggttgttgcggaaggccacc
gcgctgcccgcccgccgagccgagtactttgacggctcggagcctgtgcagaaccgtgtg
tacaagtcgctgaaggtgtggtcgatgctcgctgacctagaggagagcctaggcaccttc
cagtccaccaaggccgtgtatgaccgcatcctggacctgcgcatcgccacgccccagatc
gtcatcaactacgccatgttcctggaggagcacaagtactttgaggagagcttcaaggcg
tacgagcgtggcatctcgctgttcaagtggcccaacgtgtccgacatctggagcacctac
ctgaccaaattcatcgcccgctacgggggccgcaagctggagcgagcgcgggacctcttt
gaacaggcgctggacggctgccctcccaaatacgccaagacgctgtacctgctgtacgcg
cagctggaggaggagtggggcctggcccggcacgccatggccgtgtatgagcgcgccacc
agggccgtggagcccgcgcagcagtacgacatgttcaacatctacatcaagcgcgcagcc
gagatctacggcgtcacccacacccgcggcatctatcagaaggccattgaggtgctgtca
gatgagcacgcccgggagatgtgcctgcggttcgcggacatggagtgcaggcttggcgag
atcgaccgggcacgcgccatctatagcttctgctcccagatctgtgacccccggaccact
ggggctttctggcaaacgtggaaggacttcgaggtccggcacggcaatgaggataccatc
cgggagatgctgcggatccgccgcagcgtgcaggccacatacaacactcaggtcaacttc
atggcctcgcagatgctcaaggtgtcaggcagcgccacgggcactgtgtctgacctggcc
cctgggcagagtggcatggatgacatgaagctgctggagcagcgggcagagcagctagcc
gccgaggccgagcgggaccagcccccgcgggcccagagcaagatcctgtttgtgaggagt
gatgcctcccgggaggagctggccgagctggcccagcaagccaacccggaggagatcgag
ctgggtggggatgacgacgaggacgacatggacctggagcccaatgaggtgcggctggag
cagcagagtgtgccggccgccgtgttcgggagcctgaaggaggactga
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