Odobenus rosmarus divergens (Pacific walrus): 101385250
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Entry
101385250 CDS
T05148
Symbol
RTCB
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
oro
Odobenus rosmarus divergens (Pacific walrus)
Brite
KEGG Orthology (KO) [BR:
oro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
oro03016
]
101385250 (RTCB)
Enzymes [BR:
oro01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
101385250 (RTCB)
Transfer RNA biogenesis [BR:
oro03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
101385250 (RTCB)
Prokaryotic type
tRNA splicing ligases
101385250 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
101385250
NCBI-ProteinID:
XP_004414249
UniProt:
A0A2U3WXQ0
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MSRSYNDELQFLEKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMSDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMSAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgtagttataatgatgagctgcagttcttggaaaagatcaataaaaactgctgg
agaatcaagaagggcttcgtgcccaacatgcaggttgaaggagttttctacgtgaatgat
gctctggaaaaattaatgtttgaggaattaaggaatgcctgtcggggtggtggtgtcggt
ggcttcctgccagccatgaaacaaattggcaatgtggcagccctgcctgggattgttcat
cgatctattgggcttcctgatgtccattcaggatatgggtttgctattgggaatatggca
gcctttgatatgagtgaccctgaagcagtggtatccccaggtggcgttggatttgacatc
aactgcggtgtgcgcttgctaagaaccaatttagacgaaagtgatgtccagcctgtgaag
gagcagcttgcccaagctatgtttgaccacattcctgttggggtgggatcaaaaggtgtc
atccccatgagtgccaaagacttggaggaggccttggagatgggtgtggactggtccctg
cgggaaggctatgcctgggctgaagacaaggagcactgtgaggagtacggaaggatgttg
caggccgaccccaacaaggtctctgcgagggctaagaaaagaggccttcctcagttgggg
accctgggagcaggcaaccactatgcagaaatccaggttgtggatgagattttcaatgag
tacgcagctaagaaaatgggcatcgaccataagggacaggtgtgtgtgatgatccacagt
ggaagcagaggcctgggccaccaagtagccacagatgcactggtagctatggaaaaagcc
atgaagagagacaagattatagtcaacgaccggcagttggcttgtgctcggattgcttcc
ccagagggtcaggactacctgaaggggatggcagctgctgggaactatgcctgggtcaac
cgctcctccatgaccttcttaacccgtcaggcctttgccaaggtcttcaacacaacccct
gatgacttggacctgcatgtgatctatgacgtttctcacaatattgccaaagtagagcag
catgtggtggacggaaaggaacggacactgttggttcacaggaagggatccacccgagct
ttcccccctcaccatcccctcattgctgttgattaccaactcactggacaacccgtgctc
attggcggcaccatgggcacttgtagttacgttcttactggcactgaacagggtatgact
gagacctttggaacgacttgtcatggagcgggccgtgcactgtcccgagcaaaatctcgt
cgtaatttagattttcaggatgtcttggacaaactggcagatatgggaatcgcaatccgc
gttgcctcacccaaattggttatggaagaggctcctgagtcctataagaacgtgacggat
gtggtgaacacctgccacgatgctggaatcagcaagaaggccattaaactgagaccgatt
gccgtgatcaaaggatag
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integrated database retrieval system
